Query gi|254780946|ref|YP_003065359.1| hypothetical protein CLIBASIA_04225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 114 out of 652
Neff 5.9
Searched_HMMs 13730
Date Wed Jun 1 10:50:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780946.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1puza_ a.218.1.1 (A:) Hypothe 99.9 9.4E-26 6.8E-30 167.0 9.1 81 1-82 1-81 (82)
2 d1xrxa1 a.43.1.7 (A:1-35) SeqA 22.3 22 0.0016 14.4 2.1 29 54-82 6-34 (35)
3 d2ecca1 a.4.1.1 (A:1-76) Homeo 19.9 26 0.0019 14.0 3.4 45 20-66 11-55 (76)
4 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 15.3 33 0.0024 13.4 2.1 44 21-66 17-60 (67)
5 d1wi3a_ a.4.1.1 (A:) DNA-bindi 14.4 35 0.0026 13.2 4.0 39 27-65 21-59 (71)
6 d1b72a_ a.4.1.1 (A:) Homeobox 12.1 41 0.003 12.8 2.5 45 20-66 35-79 (88)
7 d2cqxa1 a.4.1.1 (A:8-66) LAG1 9.6 51 0.0037 12.3 3.8 39 27-65 15-53 (59)
8 d1fkma2 a.69.2.1 (A:443-630) Y 9.3 52 0.0038 12.2 2.2 19 45-63 10-28 (188)
9 d1n1fa_ a.26.1.3 (A:) Interleu 9.0 54 0.0039 12.1 2.4 18 21-38 54-71 (156)
10 d1bw5a_ a.4.1.1 (A:) Insulin g 9.0 54 0.0039 12.1 3.5 43 22-66 13-55 (66)
No 1
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=99.92 E-value=9.4e-26 Score=166.99 Aligned_cols=81 Identities=31% Similarity=0.457 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 98658999999999997407899999999999998202999999999999468917999999488999806756999999
Q gi|254780946|r 1 MKKNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80 (98)
Q Consensus 1 M~~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I 80 (98)
||..-|.++|||+||| ||||+|+|+|||+|+++++++++++++.+|+.||+++|+|||+|++|+++||+...++|+++|
T Consensus 1 m~~~~d~~~krl~~r~-rRG~kElDllL~~F~~~~~~~l~~~el~~f~~lL~~~D~dL~~wl~g~~~~p~~~~~~ii~~I 79 (82)
T d1puza_ 1 MMVFDDIAKRKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETDKGHLIPMLEKI 79 (82)
T ss_dssp CCCCCHHHHHHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCHHHHHHHHHTCSCCSCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9755288998999983-035299999999999999987999999999999839859999999189999929899999998
Q ss_pred HH
Q ss_conf 99
Q gi|254780946|r 81 YD 82 (98)
Q Consensus 81 ~~ 82 (98)
+.
T Consensus 80 rk 81 (82)
T d1puza_ 80 RR 81 (82)
T ss_dssp HH
T ss_pred HC
T ss_conf 71
No 2
>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}
Probab=22.30 E-value=22 Score=14.40 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=19.4
Q ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 91799999948899980675699999999
Q gi|254780946|r 54 DDSNLFKWFTGMEKPPEYLRTPIFKKIYD 82 (98)
Q Consensus 54 ~D~dL~~wl~~~~~~p~~~~~~ii~~I~~ 82 (98)
-|.|||.++..+...-.+--+.|++++.+
T Consensus 6 vddeLY~yIas~t~~iGEsaSdILRRll~ 34 (35)
T d1xrxa1 6 VDDELYSYIASHTKHIGESASDILRRMLK 34 (35)
T ss_dssp ECHHHHHHHHTTCSSTTCCHHHHHHHHHT
T ss_pred EHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 10999999998666742479999999865
No 3
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.92 E-value=26 Score=14.01 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 78999999999999982029999999999994689179999994889
Q gi|254780946|r 20 GTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGME 66 (98)
Q Consensus 20 G~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~ 66 (98)
--..+.+|-.-|..+.++ +..+...+...+.++...+-.||.++.
T Consensus 11 T~eQ~~~Le~~F~~n~~P--s~~~~~~La~~~gL~~~qV~~WF~NrR 55 (76)
T d2ecca1 11 TKEQLAILKSFFLQCQWA--RREDYQKLEQITGLPRPEIIQWFGDTR 55 (76)
T ss_dssp CHHHHHHHHHHHHHCSSC--CHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999986789--999999999998057999999999999
No 4
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.27 E-value=33 Score=13.35 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 8999999999999982029999999999994689179999994889
Q gi|254780946|r 21 TREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGME 66 (98)
Q Consensus 21 ~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~ 66 (98)
-.++++|-.-|..+.++ +..+...+..-+.++..-+-.|+.++.
T Consensus 17 ~~q~~~Le~~F~~n~~P--~~~~r~~La~~~~l~~~~V~~WFqNrR 60 (67)
T d1ocpa_ 17 NRVRWSLETMFLKCPKP--SLQQITHIANQLGLEKDVVRVWFCNRR 60 (67)
T ss_dssp HHHHHHHHHHHSSCSCC--CHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC--CHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999872579--999999999998478899999858788
No 5
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.35 E-value=35 Score=13.21 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 999999998202999999999999468917999999488
Q gi|254780946|r 27 ILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM 65 (98)
Q Consensus 27 lL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~ 65 (98)
+|..++.+.-...+..+...+..-+.++..-+-.||.++
T Consensus 21 ~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFqNr 59 (71)
T d1wi3a_ 21 ILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQ 59 (71)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999980677989999999878279999999981855
No 6
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.05 E-value=41 Score=12.80 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 78999999999999982029999999999994689179999994889
Q gi|254780946|r 20 GTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGME 66 (98)
Q Consensus 20 G~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~ 66 (98)
--.++++|-.-|..+.++ +..+...+..-|.++..-+-.|+-++.
T Consensus 35 t~~Ql~~Le~~F~~n~yP--s~~~r~~LA~~l~l~~~~V~vWFqNrR 79 (88)
T d1b72a_ 35 TTRQLTELEKEFHFNKYL--SRARRVEIAATLELNETQVKIWFQNRR 79 (88)
T ss_dssp CHHHHHHHHHHHTTCSSC--CHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCC--CHHHHHHHHHHCCCCHHHEEECCHHHH
T ss_conf 999999999999967887--527899999982999778424357587
No 7
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.56 E-value=51 Score=12.29 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 999999998202999999999999468917999999488
Q gi|254780946|r 27 ILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM 65 (98)
Q Consensus 27 lL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~ 65 (98)
+|..|+...-.--+..+...+..-+.++...+-.|+.++
T Consensus 15 iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqNr 53 (59)
T d2cqxa1 15 TLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHR 53 (59)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999884899599999999999781999999999961
No 8
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.25 E-value=52 Score=12.22 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=6.9
Q ss_pred HHHHHHHCCCCHHHHHHHH
Q ss_conf 9999994689179999994
Q gi|254780946|r 45 TMLESIIEEDDSNLFKWFT 63 (98)
Q Consensus 45 ~~f~~LL~~~D~dL~~wl~ 63 (98)
..|+.+|..-||+||+.+.
T Consensus 10 ~~l~~ll~~~dp~L~~hl~ 28 (188)
T d1fkma2 10 KNLSQLVKRIDADLYNHFQ 28 (188)
T ss_dssp HHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998899999999
No 9
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.95 E-value=54 Score=12.15 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 899999999999998202
Q gi|254780946|r 21 TREMDLILGSFVDHFILE 38 (98)
Q Consensus 21 ~kElDllL~~F~~~~~~~ 38 (98)
+-=+.-+|.=|++.-+++
T Consensus 54 C~~~~~lL~FYLe~Vfp~ 71 (156)
T d1n1fa_ 54 CCVTKNLLAFYVDRVFKD 71 (156)
T ss_dssp HHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 089999999999998576
No 10
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.95 E-value=54 Score=12.15 Aligned_cols=43 Identities=7% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 999999999999982029999999999994689179999994889
Q gi|254780946|r 22 REMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGME 66 (98)
Q Consensus 22 kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~ 66 (98)
..+.+|-.-|..+.++ +..+...+..-+.++..-+-.|+.++.
T Consensus 13 ~Q~~~Le~~F~~n~~P--s~~~~~~LA~~l~l~~~~V~~WFqNrR 55 (66)
T d1bw5a_ 13 KQLHTLRTCYAANPRP--DALMKEQLVEMTGLSPRVIRVWFQNKR 55 (66)
T ss_dssp HHHHHHHHHHHHCSCC--CHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC--CHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999999999987899--999999999990939788225307688
Done!