RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780946|ref|YP_003065359.1| hypothetical protein
CLIBASIA_04225 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
          Length = 668

 Score = 30.5 bits (70), Expect = 0.095
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 45  TMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFK 78
            +LE++ E DD  + K+  G E   E ++  + K
Sbjct: 196 ELLEALAEFDDELMEKYLEGEELSEEEIKAGLRK 229


>gnl|CDD|184989 PRK15029, PRK15029, arginine decarboxylase; Provisional.
          Length = 755

 Score = 28.7 bits (64), Expect = 0.38
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 6/33 (18%)

Query: 71  YLRTPIFKKIYDYYSNNLDRKNM------LGSL 97
           + +TP  +  +DYY  NL R +M      LGSL
Sbjct: 168 FTKTPAGRFYHDYYGENLFRTDMGIERTSLGSL 200


>gnl|CDD|183122 PRK11410, PRK11410, hypothetical protein; Provisional.
          Length = 561

 Score = 27.4 bits (61), Expect = 0.84
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 68  PPEYLRTPIFKKIY-----DYYSNNLDRKNMLGSLQ 98
           P + L  P+ + +       YY N+ DR  + GSL+
Sbjct: 69  PKDLLTVPLLRDVLTEDFVFYYENHADRLGLEGSLR 104


>gnl|CDD|162931 TIGR02578, cas_TM1811_Csm1, CRISPR-associated protein, Csm1 family.
            The family is designated Csm2, for CRISPR/Cas Subtype
           Mtube Protein 2. A typical example is TM1811 from
           Thermotoga maritima. CRISPR are Clustered Regularly
           Interspaced Short Palindromic Repeats. This protein
           family belongs to a conserved gene cluster regularly
           found near CRISPR repeats.
          Length = 648

 Score = 26.6 bits (59), Expect = 1.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 33  DHFILELSSVELTMLESIIEEDDSNLFKWFTGME 66
            HF L L + E   LE + E  +  L K F G  
Sbjct: 306 GHFYLLLPNTEEARLEKLRERIEEELLKEFRGEM 339


>gnl|CDD|150567 pfam09909, DUF2138, Uncharacterized protein conserved in bacteria
          (DUF2138).  This domain, found in various hypothetical
          prokaryotic proteins, has no known function.
          Length = 552

 Score = 26.3 bits (58), Expect = 1.7
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 68 PPEYLRTPIFKKIY-----DYYSNNLDRKNMLGSLQ 98
          P + LR P+ + +       YY N+ DR  + GSL+
Sbjct: 60 PKDLLRVPLLRDVLTEDFVFYYENHADRLGLEGSLR 95


>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase; Provisional.
          Length = 448

 Score = 25.3 bits (56), Expect = 4.0
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 20  GTREMDLILGSFVDHFILELSSVEL 44
           GT  +DL+     + ++LELSS +L
Sbjct: 144 GTPALDLLSDD-PELYVLELSSFQL 167


>gnl|CDD|148339 pfam06679, DUF1180, Protein of unknown function (DUF1180).  This
           family consists of several hypothetical mammalian
           proteins of around 190 residues in length. The function
           of this family is unknown.
          Length = 163

 Score = 25.3 bits (55), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 39  LSSVELTMLESIIEEDDSNLF 59
             ++ELT LE   E+DDS LF
Sbjct: 136 AENMELTPLEQDDEDDDSTLF 156


>gnl|CDD|182803 PRK10878, PRK10878, hypothetical protein; Provisional.
          Length = 72

 Score = 25.1 bits (55), Expect = 4.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 22 REMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKP 68
          RE+D+ +  F +H    LS  E  +   ++E DD +LF W     KP
Sbjct: 2  RELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKP 48


>gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional.
          Length = 227

 Score = 25.0 bits (55), Expect = 5.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 15  RCWRRGTREMDLI 27
           R WRRG  + DL+
Sbjct: 125 RHWRRGFNQSDLL 137


>gnl|CDD|163229 TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108
           family.  Work by Mougous, et al. (2006), describes
           IAHP-related loci as a type VI secretion system
           (PubMed:16763151). This protein family is associated
           with type VI secretion loci, although not treated
           explicitly by Mougous, et al.
          Length = 473

 Score = 24.6 bits (54), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 66  EKPPEYLRTPIFKKIYDY 83
           E  PE+ ++ +FKK+Y+ 
Sbjct: 114 EDAPEFDQSGLFKKVYEE 131


>gnl|CDD|180657 PRK06687, PRK06687, chlorohydrolase; Validated.
          Length = 419

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 44 LTMLESIIEEDDSNLFKWFTGMEKPPEYLRTP 75
          +T L  I   DDSNL +W      P E   TP
Sbjct: 69 MTGLRGI--RDDSNLHEWLNDYIWPAESEFTP 98


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,602,925
Number of extensions: 87458
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 20
Length of query: 98
Length of database: 5,994,473
Length adjustment: 65
Effective length of query: 33
Effective length of database: 4,589,953
Effective search space: 151468449
Effective search space used: 151468449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.0 bits)