RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780946|ref|YP_003065359.1| hypothetical protein
CLIBASIA_04225 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria
          meningitidis, mc58 [TaxId: 487]}
          Length = 82

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 10 RKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPP 69
          RKI ++  RRG  E+DLI G F++     LS  EL+    I+E  D  L     G  +  
Sbjct: 10 RKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETD 68

Query: 70 EYLRTPIFKKI 80
          +    P+ +KI
Sbjct: 69 KGHLIPMLEKI 79


>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase,
           C-terminal domain {Bacillus subtilis [TaxId: 1423]}
          Length = 231

 Score = 25.4 bits (55), Expect = 1.4
 Identities = 10/60 (16%), Positives = 17/60 (28%)

Query: 8   QCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEK 67
             R+IV      G  E+ + + S              T  E I      +  +   G + 
Sbjct: 119 TSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEELIASSHSVDEIRQEIGADT 178


>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 188

 Score = 25.5 bits (56), Expect = 1.4
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 51  IEEDDSNLFKWFTGMEKPPEY 71
           I  D   LF+   G  +P  +
Sbjct: 167 IVHDVYRLFRILDGDPEPARF 187


>d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId:
          287]}
          Length = 298

 Score = 24.9 bits (54), Expect = 1.7
 Identities = 1/14 (7%), Positives = 4/14 (28%)

Query: 77 FKKIYDYYSNNLDR 90
             ++  Y +    
Sbjct: 80 GGVVFKLYRDWFGT 93


>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK
           {Escherichia coli [TaxId: 562]}
          Length = 187

 Score = 24.0 bits (52), Expect = 3.5
 Identities = 3/21 (14%), Positives = 8/21 (38%)

Query: 51  IEEDDSNLFKWFTGMEKPPEY 71
           I  +   +F +     +P  +
Sbjct: 166 ITNEVRRVFNFIENPYRPVTF 186


>d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal
           domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 275

 Score = 24.0 bits (52), Expect = 3.8
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 9/46 (19%)

Query: 10  RKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDD 55
           R++ Y    R             DHFI    +++   L    E  D
Sbjct: 92  RELAYDWQLRA---------ILQDHFIKPEETLDNYRLVKYHELGD 128


>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
           (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 267

 Score = 23.7 bits (50), Expect = 4.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 46  MLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80
           +LE+I+E D+  L K+  G E   E L     + +
Sbjct: 201 VLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAV 235


>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 426

 Score = 23.6 bits (50), Expect = 4.9
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 1   MKKNMNLQCRKIVYRCWRRGTR--EMDLILGSFVDHFILELSSVELTMLESIIEEDDSNL 58
              +M  Q  K  YR    GT+  E+           IL      L  +E  +  +   L
Sbjct: 242 CSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEV--L 299

Query: 59  FKWFTGMEKPPEYLRTPIFKKIYDYYSNNLDRKNMLGSL 97
            +W   +E+    +  P F+    +       K  L  +
Sbjct: 300 QEWLDELEEMMLCVHMPRFRIEDGF-----SLKEQLQDM 333


>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 122

 Score = 22.8 bits (49), Expect = 7.7
 Identities = 5/29 (17%), Positives = 13/29 (44%)

Query: 28  LGSFVDHFILELSSVELTMLESIIEEDDS 56
             + + HF+  + + E   L   + E ++
Sbjct: 94  RQAALVHFVERVGADEADALRRALAELEA 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 391,570
Number of extensions: 16449
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 17
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)