BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780946|ref|YP_003065359.1| hypothetical protein
CLIBASIA_04225 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780946|ref|YP_003065359.1| hypothetical protein CLIBASIA_04225 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 98

 Score =  204 bits (518), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MKKNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFK 60
          MKKNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFK
Sbjct: 1  MKKNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFK 60

Query: 61 WFTGMEKPPEYLRTPIFKKIYDYYSNNLDRKNMLGSLQ 98
          WFTGMEKPPEYLRTPIFKKIYDYYSNNLDRKNMLGSLQ
Sbjct: 61 WFTGMEKPPEYLRTPIFKKIYDYYSNNLDRKNMLGSLQ 98


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 24.3 bits (51), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 46  MLESIIEEDDSNLFKWFTGMEKPPEYLRTPI 76
           M+ESI+E DDS +  +  G     + +R+ I
Sbjct: 220 MIESIVELDDSAMDSYLQGESFSSDRIRSLI 250


>gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone biosynthesis methyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 265

 Score = 23.5 bits (49), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 72  LRTPIFKKIYDYYS 85
           ++ P+FKKIYD +S
Sbjct: 181 VQGPVFKKIYDMWS 194


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 23.5 bits (49), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 42 VELTMLESIIEEDDSNLFKWFTGMEKPPEYLR 73
          VEL M + I EE+ S++ K   G+  P E LR
Sbjct: 43 VELCM-DIIREENKSSITKSHEGIPNPQEILR 73


>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 565

 Score = 21.9 bits (45), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 6/31 (19%), Positives = 18/31 (58%)

Query: 52  EEDDSNLFKWFTGMEKPPEYLRTPIFKKIYD 82
           E D ++LF   + +++  +++ +P+   + D
Sbjct: 103 EMDGTSLFSIISSLDQLKQFITSPVLPALLD 133


>gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 224

 Score = 20.0 bits (40), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 33  DHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYD 82
           D  +L   S    +L+S+I  +   LF   TG+      +R P   K +D
Sbjct: 95  DTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFD 144


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,481
Number of Sequences: 1233
Number of extensions: 2361
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 98
length of database: 328,796
effective HSP length: 61
effective length of query: 37
effective length of database: 253,583
effective search space:  9382571
effective search space used:  9382571
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)