HHsearch alignment for GI: 254780947 and conserved domain: CHL00122
>CHL00122 secA preprotein translocase subunit SecA; Validated.
Probab=95.92 E-value=0.052 Score=34.21 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=59.2
Q ss_pred HHHCCCEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCH
Q ss_conf 751146089626753222246-7337764146656682001001122220001858999999999986798299995894
Q gi|254780947|r 340 LIQTTHKLVQMTAFNQQETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQ 418 (1187)
Q Consensus 340 ll~~~~~ii~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~ 418 (1187)
T Consensus 355 ~Fr~y~klsGMTGTA~te~~Ef~~iY~l~Vv~IPtn~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~h~~GqPVLvGT~SV 434 (891)
T CHL00122 355 FFLLYPKLSGMTGTAKTEEVELEKIYNLEVICIPTHRPMQRKDLPDLVYKTEYSKWKAIADECFDMHKIGRPILVGTTSV 434 (891)
T ss_pred HHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf 98545042267567687899999985884798899998500308895778899999999999999996799989834655
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 589999986776488733
Q gi|254780947|r 419 GALQHLIHLIESHGFKKI 436 (1187)
Q Consensus 419 ~~~eRL~elL~e~gI~~~ 436 (1187)
T Consensus 435 e~SE~ls~~L~~~gi~h~ 452 (891)
T CHL00122 435 EKSELLSQLLEEYQLPHN 452 (891)
T ss_pred HHHHHHHHHHHHCCCCCH
T ss_conf 889999999997478622