HHsearch alignment for GI: 254780947 and conserved domain: CHL00122

>CHL00122 secA preprotein translocase subunit SecA; Validated.
Probab=95.92  E-value=0.052  Score=34.21  Aligned_cols=97  Identities=12%  Similarity=0.118  Sum_probs=59.2

Q ss_pred             HHHCCCEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCH
Q ss_conf             751146089626753222246-7337764146656682001001122220001858999999999986798299995894
Q gi|254780947|r  340 LIQTTHKLVQMTAFNQQETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQ  418 (1187)
Q Consensus       340 ll~~~~~ii~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~  418 (1187)
T Consensus       355 ~Fr~y~klsGMTGTA~te~~Ef~~iY~l~Vv~IPtn~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~h~~GqPVLvGT~SV  434 (891)
T CHL00122        355 FFLLYPKLSGMTGTAKTEEVELEKIYNLEVICIPTHRPMQRKDLPDLVYKTEYSKWKAIADECFDMHKIGRPILVGTTSV  434 (891)
T ss_pred             HHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf             98545042267567687899999985884798899998500308895778899999999999999996799989834655


Q ss_pred             HHHHHHHHHHHHCCCCCC
Q ss_conf             589999986776488733
Q gi|254780947|r  419 GALQHLIHLIESHGFKKI  436 (1187)
Q Consensus       419 ~~~eRL~elL~e~gI~~~  436 (1187)
T Consensus       435 e~SE~ls~~L~~~gi~h~  452 (891)
T CHL00122        435 EKSELLSQLLEEYQLPHN  452 (891)
T ss_pred             HHHHHHHHHHHHCCCCCH
T ss_conf             889999999997478622