HHsearch alignment for GI: 254780947 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=99.59 E-value=1.3e-11 Score=108.23 Aligned_cols=311 Identities=19% Similarity=0.298 Sum_probs=226.1
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 998488888-7448999999987605988541443166543248999999987511275499982436655589999998
Q gi|254780947|r 618 FIKRFPHVE-TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSE 696 (1187)
Q Consensus 618 Fe~~FpyeE-T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~ 696 (1187)
T Consensus 9 L~~~fGy~~FR~gQ~evI~~~l~g------~d~lvvmPTGgGKSlCyQiPAll--~~G-~TLVVSPLiSLM~----DQV~ 75 (590)
T COG0514 9 LKQVFGYASFRPGQQEIIDALLSG------KDTLVVMPTGGGKSLCYQIPALL--LEG-LTLVVSPLISLMK----DQVD 75 (590)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHCC------CCEEEECCCCCCCCHHHHHHHHH--CCC-CEEEECCHHHHHH----HHHH
T ss_conf 999709130388889999999658------86799853898710674367886--599-7899785688899----9999
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-HHHHCCCC----CCCCCCEEEEECHH---HHH------HH
Q ss_conf 606789833541066630256777753122576089852-06542785----20236569972223---300------88
Q gi|254780947|r 697 RFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT-HALLNPKI----TFANLGLIIIDEEQ---HFG------VK 762 (1187)
Q Consensus 697 Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-H~ll~~~v----~f~~LgLliiDEEq---rFG------V~ 762 (1187)
T Consensus 76 ~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 76 QLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred HHHHCCCEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCHHHH
T ss_conf 99975965204424367877999999986496459998813631768999997088756996217777641774377689
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHH--HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHH-HHHCCE-EE
Q ss_conf 899886316788489995353408899--99712225412201578877537999857978989999989-871885-99
Q gi|254780947|r 763 HKEALKETHTGVHVLTLSATPIPRTLQ--LAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMRE-YYRGGQ-SF 838 (1187)
Q Consensus 763 ~Ke~lk~~~~~vdvLtlsATPIPRTL~--msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rE-l~RgGQ-vf 838 (1187)
T Consensus 156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-fdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GI 234 (590)
T COG0514 156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS-FDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGI 234 (590)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEC-CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999851799977997378986789999998467886648715-89852345564256478889998741324689728
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCC
Q ss_conf 98264469288999998616546488861346747899999999638875797610200363322332667625023588
Q gi|254780947|r 839 YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL 918 (1187)
Q Consensus 839 ~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GL 918 (1187)
T Consensus 235 IYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~-s~ 311 (590)
T COG0514 235 IYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG-SI 311 (590)
T ss_pred EEEEEHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEECCCC-CH
T ss_conf 9993377599999999977--97257751898899999999997169986899964624776788840799806998-98
Q ss_pred CHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 604553221035676736999966888
Q gi|254780947|r 919 AQLYQLRGRVGRSKIASFALFLLPENR 945 (1187)
Q Consensus 919 aqlyQlrGRVGRs~~~ayayl~~~~~~ 945 (1187)
T Consensus 312 EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 312 ESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 999999713567877021788606300