HHsearch alignment for GI: 254780947 and conserved domain: COG0514

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=99.59  E-value=1.3e-11  Score=108.23  Aligned_cols=311  Identities=19%  Similarity=0.298  Sum_probs=226.1

Q ss_pred             HHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf             998488888-7448999999987605988541443166543248999999987511275499982436655589999998
Q gi|254780947|r  618 FIKRFPHVE-TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSE  696 (1187)
Q Consensus       618 Fe~~FpyeE-T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~  696 (1187)
T Consensus         9 L~~~fGy~~FR~gQ~evI~~~l~g------~d~lvvmPTGgGKSlCyQiPAll--~~G-~TLVVSPLiSLM~----DQV~   75 (590)
T COG0514           9 LKQVFGYASFRPGQQEIIDALLSG------KDTLVVMPTGGGKSLCYQIPALL--LEG-LTLVVSPLISLMK----DQVD   75 (590)
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHCC------CCEEEECCCCCCCCHHHHHHHHH--CCC-CEEEECCHHHHHH----HHHH
T ss_conf             999709130388889999999658------86799853898710674367886--599-7899785688899----9999


Q ss_pred             HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-HHHHCCCC----CCCCCCEEEEECHH---HHH------HH
Q ss_conf             606789833541066630256777753122576089852-06542785----20236569972223---300------88
Q gi|254780947|r  697 RFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT-HALLNPKI----TFANLGLIIIDEEQ---HFG------VK  762 (1187)
Q Consensus       697 Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-H~ll~~~v----~f~~LgLliiDEEq---rFG------V~  762 (1187)
T Consensus        76 ~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~  155 (590)
T COG0514          76 QLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR  155 (590)
T ss_pred             HHHHCCCEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCHHHH
T ss_conf             99975965204424367877999999986496459998813631768999997088756996217777641774377689


Q ss_pred             HHHHHHHCCCCCCEEEEECCCCCHHHH--HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHH-HHHCCE-EE
Q ss_conf             899886316788489995353408899--99712225412201578877537999857978989999989-871885-99
Q gi|254780947|r  763 HKEALKETHTGVHVLTLSATPIPRTLQ--LAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMRE-YYRGGQ-SF  838 (1187)
Q Consensus       763 ~Ke~lk~~~~~vdvLtlsATPIPRTL~--msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rE-l~RgGQ-vf  838 (1187)
T Consensus       156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-fdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GI  234 (590)
T COG0514         156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS-FDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGI  234 (590)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEC-CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf             99999851799977997378986789999998467886648715-89852345564256478889998741324689728


Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCC
Q ss_conf             98264469288999998616546488861346747899999999638875797610200363322332667625023588
Q gi|254780947|r  839 YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL  918 (1187)
Q Consensus       839 ~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GL  918 (1187)
T Consensus       235 IYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~-s~  311 (590)
T COG0514         235 IYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG-SI  311 (590)
T ss_pred             EEEEEHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEECCCC-CH
T ss_conf             9993377599999999977--97257751898899999999997169986899964624776788840799806998-98


Q ss_pred             CHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             604553221035676736999966888
Q gi|254780947|r  919 AQLYQLRGRVGRSKIASFALFLLPENR  945 (1187)
Q Consensus       919 aqlyQlrGRVGRs~~~ayayl~~~~~~  945 (1187)
T Consensus       312 EsYyQE~GRAGRDG~~a~aill~~~~D  338 (590)
T COG0514         312 ESYYQETGRAGRDGLPAEAILLYSPED  338 (590)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf             999999713567877021788606300