HHsearch alignment for GI: 254780947 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=96.52 E-value=0.0034 Score=43.40 Aligned_cols=153 Identities=19% Similarity=0.249 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC----CEEEEEECHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 899999998760598854144316654324899999998751127----5499982436655589999998606789833
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG----LQVAVIAPTTLLVRQHFRLFSERFQGFSVRI 705 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g----kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i 705 (1187)
T Consensus 343 q~~g~-~wl~~~l~~~~~~~ilad~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~--~k~~~~~~~- 418 (866)
T COG0553 343 QLEGV-NWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREF--EKFAPDLRL- 418 (866)
T ss_pred HHHHH-HHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHH--HHHCCHHHH-
T ss_conf 99866-99999877623687757523342199999998777764013578726871477776799999--861412100-
Q ss_pred EEECCCCCCHH---HHHHHHHHCCC----CCEEEEECHHHHCC---CCC-CC--CCCEEEEECHHHHHHHHH---HHHHH
Q ss_conf 54106663025---67777531225----76089852065427---852-02--365699722233008889---98863
Q gi|254780947|r 706 ASISRFVQTKE---AALHKKSITEG----QVDIVIGTHALLNP---KIT-FA--NLGLIIIDEEQHFGVKHK---EALKE 769 (1187)
Q Consensus 706 ~~lsRf~~~~e---~~~i~~~l~~G----~idiviGTH~ll~~---~v~-f~--~LgLliiDEEqrFGV~~K---e~lk~ 769 (1187)
T Consensus 419 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~ 497 (866)
T COG0553 419 -VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQF 497 (866)
T ss_pred -HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf -2321153112103699999998621330101899999999975020554223677698997887540477899999998
Q ss_pred CCCCCCEEEEECCCCCHHH
Q ss_conf 1678848999535340889
Q gi|254780947|r 770 THTGVHVLTLSATPIPRTL 788 (1187)
Q Consensus 770 ~~~~vdvLtlsATPIPRTL 788 (1187)
T Consensus 498 ~~~~~~-~~LtgTPlen~l 515 (866)
T COG0553 498 LKALNR-LDLTGTPLENRL 515 (866)
T ss_pred HHHHHH-HHCCCCCHHHHH
T ss_conf 755433-228999645608