HHsearch alignment for GI: 254780947 and conserved domain: COG0556
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=412.08 Aligned_cols=455 Identities=18% Similarity=0.281 Sum_probs=362.5
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEC-------------
Q ss_conf 78876514886089803765227999999-9862998999929989999999999985799809985-------------
Q gi|254780947|r 6 DIERISEKYCKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF------------- 71 (1187)
Q Consensus 6 ~~~~~~~k~~~~i~l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~F------------- 71 (1187)
T Consensus 24 Lv~g-i~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPEAYv 102 (663)
T COG0556 24 LVEG-IENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYV 102 (663)
T ss_pred HHHH-HHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
T ss_conf 9988-863860258862036883107999999868971998255547999999999768676458886400146851345
Q ss_pred CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 72246701004899899999999999984124468876999566785236998668851548994097419999999999
Q gi|254780947|r 72 PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLE 151 (1187)
Q Consensus 72 P~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv 151 (1187)
T Consensus 103 p~tDtyIEKdasiNdeId~mR~SAt~sLle----R~DVIVVaSVScI-YGlG~P~~y~~~~~~l~vG~~i~~~~ll~~Lv 177 (663)
T COG0556 103 PSTDTYIEKDASINDEIDRLRHSATRSLLE----RRDVIVVASVSCI-YGLGSPEEYLKMMLSLEVGQEIDRRELLRKLV 177 (663)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHHHHHHHC----CCCEEEEEEEEEE-CCCCCHHHHHHHEEEEECCCCCCHHHHHHHHH
T ss_conf 777735753650678999999998887750----4786999987651-04898699875379983577348999999999
Q ss_pred HCCCEECCCCCCCCEEEEECCEEEEECC-CCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHHHH
Q ss_conf 8288455452178316545747573069-888726886348722101545137485312221699943773217999999
Q gi|254780947|r 152 TNGFQRVNAVYKVGEYAVRGGILDVYEP-TKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNIS 230 (1187)
Q Consensus 152 ~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~-~~~~PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~i~ 230 (1187)
T Consensus 178 ~~qY~Rnd~~f~rG~FRvrGDvveIfPa~~~~~~~RieffgDEie~i~~~dpltg~~~~~~~~~~iypashyvt~~~~~~ 257 (663)
T COG0556 178 DLQYERNDVDFQRGTFRVRGDVVEIFPAYYDDEAIRIEFFGDEIERISEFDPLTGQVIGELDRFTIYPASHYVTPRERLE 257 (663)
T ss_pred HHCEEECCCCCCCCCEEEECCEEEECCCCCCCEEEEEEECCCHHHEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHH
T ss_conf 72611145554667158517679972166676059999727530335344456685213455189805633147888999
Q ss_pred HHHHHHHHHCCCCH-----------------HHCHHHHHHHCCCCCCCHHHHHHHHH-----CCCCCCCCCCCCCCEECC
Q ss_conf 99999997417370-----------------01577789977898788777677761-----487676733467613346
Q gi|254780947|r 231 RFRENYLANFGTTT-----------------QEDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFPYLSEFCIITD 288 (1187)
Q Consensus 231 ~fr~~~r~~f~~~~-----------------~~~~i~e~Is~g~~~~GiE~yLPlFy-----e~~~tLfDYLp~~~iii~ 288 (1187)
T Consensus 258 ~Ai~~Ik~EL~eRl~~~~~~~kllEaqRL~qRT~~DlEMl~e~G~C~GIENYSRhl~gr~~Ge~P~tL~DYfp~d~Ll~I 337 (663)
T COG0556 258 QAIESIKEELEERLKFFEKNNKLLEAQRLEQRTEYDLEMLRETGYCSGIENYSRHLTGRKPGEPPYTLFDYFPDDFLLFI 337 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEE
T ss_conf 99999999999999999877953788888877775399999828776613335650589999579847885884138998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCC---CCCCCCCCEEE
Q ss_conf 535899998899999998999998652220265567850211699899999751146089626753---22224673377
Q gi|254780947|r 289 PLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFN---QQETAHNRVVH 365 (1187)
Q Consensus 289 ~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~---~~~~~~~~~~~ 365 (1187)
T Consensus 338 DESHvTvPQ----i~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~---q~i~VSATPg~~E~e~s~~~vve 410 (663)
T COG0556 338 DESHVTVPQ----IGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIP---QTIYVSATPGDYELEQSGGNVVE 410 (663)
T ss_pred ECCCCCHHH----HHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC---CEEEEECCCCHHHHHHCCCCEEE
T ss_conf 244465076----53201333788888987157686111379977799997459---77999789974877745584268
Q ss_pred EEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHH-
Q ss_conf 6414665668200100112222000185899999999998679829999589458999998677648873323452245-
Q gi|254780947|r 366 LNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTE- 444 (1187)
Q Consensus 366 l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~~- 444 (1187)
T Consensus 411 QiIRPTGLlDP~-------ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTl 483 (663)
T COG0556 411 QIIRPTGLLDPE-------IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTL 483 (663)
T ss_pred EEECCCCCCCCC-------EEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 872477888985-------2651487747899999999996497299984368889999999986696478642440389
Q ss_pred -----HHCCCCCCEEEEEC--CCCCCCCCC--CEEEEECCCCCCC
Q ss_conf -----52046684799981--044687466--5688712001373
Q gi|254780947|r 445 -----INSLLKEEIAAVIL--PINQGFETK--HMILVTETDLLGK 480 (1187)
Q Consensus 445 -----~~~~~~~~i~i~~~--~L~~GF~~~--kl~vITE~EIFG~ 480 (1187)
T Consensus 484 ER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGF 528 (663)
T COG0556 484 ERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGF 528 (663)
T ss_pred HHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCC
T ss_conf 999999997577874898501331347886455798860685444