HHsearch alignment for GI: 254780947 and conserved domain: COG0653

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion].
Probab=92.99  E-value=0.35  Score=27.88  Aligned_cols=620  Identities=14%  Similarity=0.133  Sum_probs=270.5

Q ss_pred             EECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCC
Q ss_conf             92998999999999998579980998572246701004899899999999999984124468876999566785236998
Q gi|254780947|r   45 ICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVN  124 (1187)
Q Consensus        45 I~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp  124 (1187)
T Consensus       102 TGEGKTL~atlp~ylnaL~gk-gVhvVTvNdYL--------A~RDae~m~~l~~~LGLs----vG~~~~~m~~~e----k  164 (822)
T COG0653         102 TGEGKTLVATLPAYLNALAGK-GVHVVTVNDYL--------ARRDAEWMGPLYEFLGLS----VGVILAGMSPEE----K  164 (822)
T ss_pred             CCCCHHHHHHHHHHHHHCCCC-CCEEEEEHHHH--------HHHCHHHHHHHHHHCCCC----EEECCCCCCHHH----H
T ss_conf             377359998899999723899-74895004877--------442899989999876882----322358898678----6


Q ss_pred             HHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCEEEEEEEEECCC
Q ss_conf             66885154899409741999999999982884554521783165457475730698887268863487221015451374
Q gi|254780947|r  125 IMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSST  204 (1187)
Q Consensus       125 ~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~PiRIEFFGDeIESIR~FDp~T  204 (1187)
T Consensus       165 ~~aY-~~DItY~TnnElGFDYLRDNm~---~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG--~~~~~~~~Y~~~~  238 (822)
T COG0653         165 RAAY-ACDITYGTNNELGFDYLRDNMV---TSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG--PAEDSSELYKKVD  238 (822)
T ss_pred             HHHH-HCCCEECCCCCCCCCHHHHHHH---CCHHHHHHCCCCEEEECCHHHEEEECCCCCEEEEC--CCCCCCHHHHHHH
T ss_conf             8887-3375430550017552221432---05877550368838875514400000366523216--6656725999999


Q ss_pred             C--CCCCCCCEEEEEC-CCCEECCHHHHHHHHHHHHHHCCCCHH----HCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             8--5312221699943-773217999999999999974173700----15777899778987887776777614876767
Q gi|254780947|r  205 Q--RTIREISIFEINT-LSEVMLTSQNISRFRENYLANFGTTTQ----EDPLYVAISQGRRYPGMEHWLPFFYQSMETIF  277 (1187)
Q Consensus       205 Q--RSi~~i~~i~I~P-a~E~il~~e~i~~fr~~~r~~f~~~~~----~~~i~e~Is~g~~~~GiE~yLPlFye~~~tLf  277 (1187)
T Consensus       239 ~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~----------~l~~~D----~  304 (822)
T COG0653         239 DLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAH----------ILFFRD----V  304 (822)
T ss_pred             HHHHHHCCCCCEEECCHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH----------HHHHCC----C
T ss_conf             99987434545365313220331434299999984841014536677775689999878----------876328----7


Q ss_pred             CCC-CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCCCC
Q ss_conf             334-6761334653589999889999999899999865222026556785021169989999975114608962675322
Q gi|254780947|r  278 PYL-SEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ  356 (1187)
Q Consensus       278 DYL-p~~~iii~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~~~  356 (1187)
T Consensus       305 dYIVrd~ev~IvD~ftGR~m~-gRr~s~GLhQAiEAKE-------gv~i~~e~~tlatITfQn~fR~y~kl~gMTGTA~t  376 (822)
T COG0653         305 DYIVRDGEVVIVDEFTGRMME-GRRWSDGLHQAIEAKE-------GVEIQEENQTLATITFQNLFRLYPKLAGMTGTADT  376 (822)
T ss_pred             EEEEECCEEEEEECCCCCCCC-CCCCCCHHHHHHHHHC-------CCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             169856908998456687666-8688816689999844-------88533363664468599999876887467776056


Q ss_pred             CCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf             2246-733776414665668200100112222000185899999999998679829999589458999998677648873
Q gi|254780947|r  357 ETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKK  435 (1187)
Q Consensus       357 ~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~  435 (1187)
T Consensus       377 e~~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h  456 (822)
T COG0653         377 EEEEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPH  456 (822)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCHHHHHHHHHCCCCC
T ss_conf             78888987477126623788656778122003527988999999999999659988976731422526778998649974


Q ss_pred             C-CCCCCHH-H--H--HCCCCCCEEEEECCCCCC----------CC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3-2345224-5--5--204668479998104468----------74--66568871200137311122122222221101
Q gi|254780947|r  436 I-KKINTLT-E--I--NSLLKEEIAAVILPINQG----------FE--TKHMILVTETDLLGKKIARRVVRKKNVHAQSF  497 (1187)
Q Consensus       436 ~-~~~~~~~-~--~--~~~~~~~i~i~~~~L~~G----------F~--~~kl~vITE~EIFG~k~~~r~~rkk~~~~~~i  497 (1187)
T Consensus       457 ~VLNAk~h~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGR---sG---  530 (822)
T COG0653         457 NVLNAKNHAREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGR---AG---  530 (822)
T ss_pred             EEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHCC---CC---
T ss_conf             044043679999987612788866316532467752036897789997078568732542156777775045---55---


Q ss_pred             CCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEE------ECCCCEEEEEHHHHHHHHHHCC-CCCCCCCCCC
Q ss_conf             22444032351120355423311231014566666359999------8699879966675211110036-7888532343
Q gi|254780947|r  498 FDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELH------YADNAKLFVPVENIDLISRYST-EITTVTLDKL  570 (1187)
Q Consensus       498 ~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~Ie------Ya~~DkLYVPv~~l~lIskYg~-~~~~p~L~kL  570 (1187)
T Consensus       531 ------RQGDp--------------------G~S~F~lSleD~L~r~F~~-d~~~~~------~~~l~~~~~e-~i~~~~  576 (822)
T COG0653         531 ------RQGDP--------------------GSSRFYLSLEDDLMRRFAS-DRLPAL------MDKLGLKEGE-AIESKM  576 (822)
T ss_pred             ------CCCCC--------------------CHHHHHHHHHHHHHHHHCC-HHHHHH------HHHHCCCCCC-CCCCHH
T ss_conf             ------68996--------------------4331023238999987372-456778------7764486567-565188


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-CCCCCCCC-HHHHHHHHHH----CCCCCCHHHHHH
Q ss_conf             4034899999999999999999999-----------99988740-15677878-4678989984----888887448999
Q gi|254780947|r  571 GGSAWKTRKANLKKRLEDLAQKLVD-----------IAAKRAIH-SVPPLMVS-QDLYSQFIKR----FPHVETEDQEKA  633 (1187)
Q Consensus       571 Gg~~W~k~K~Kakk~v~diA~eLl~-----------lyA~R~~~-~g~~f~~d-~~~~~eFe~~----FpyeET~DQ~~A  633 (1187)
T Consensus       577 ~~~~ie~aQk~vE~~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d  656 (822)
T COG0653         577 VTRAVERAQRKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEALDLSEFISKMIEDVIKALVGEYIPPPQQAELWD  656 (822)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             99999988999970588187667777578899899999988877766667899999999999998503578500221321


Q ss_pred             HHHHHHHCCCCCCCCEEEE-CCCCCC-HHHHH--HHHHHHHHCCCCEEEEEECHHHHH----------HHHHHHHHHHHC
Q ss_conf             9999876059885414431-665432-48999--999987511275499982436655----------589999998606
Q gi|254780947|r  634 IDAVIQDLSSGRLMDRLIC-GDVGFG-KTEIA--LRAAFIAVMNGLQVAVIAPTTLLV----------RQHFRLFSERFQ  699 (1187)
Q Consensus       634 I~eV~~Dmes~~PMDRLiC-GDVGfG-KTEVA--~RAafkav~~gkQvavlvPTTiLa----------~QH~~tf~~Rf~  699 (1187)
T Consensus       657 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~e~i~~~~~~~~~~k~~--~~~~~~~~~~r~v~l~~iD~~W~ehl~~md  734 (822)
T COG0653         657 LEGLIDELKGTVHPDLPINKSDLEDEAEEELAERILKAADEAYDKKEE--VGPEAMREFERYVMLQVLDYLWREHLDAMD  734 (822)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999986532754105777652254899999999999999875412--389999999999999988677898899999


Q ss_pred             CCCCCEEEECCCCCCHH---HHHHHHHHCCCCCEEEEECHHHHCC-CCCCCCCCEEEEECHHH
Q ss_conf             78983354106663025---6777753122576089852065427-85202365699722233
Q gi|254780947|r  700 GFSVRIASISRFVQTKE---AALHKKSITEGQVDIVIGTHALLNP-KITFANLGLIIIDEEQH  758 (1187)
Q Consensus       700 ~~pv~i~~lsRf~~~~e---~~~i~~~l~~G~idiviGTH~ll~~-~v~f~~LgLliiDEEqr  758 (1187)
T Consensus       735 ~Lr~~I~lR~y~qk~Pl~eyk~e~~~~Fe~m~~~i~~~~~~~l~~~~~~~-------~~~~~~  790 (822)
T COG0653         735 ALREGIHLRGYAQKDPLIEYKREAFELFEDMLEDIKEDVVKRLFKVQVAE-------VEEEDR  790 (822)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCHH
T ss_conf             99998546766168808899999999999999888999999997145343-------331125