HHsearch alignment for GI: 254780947 and conserved domain: COG0653
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion].
Probab=92.99 E-value=0.35 Score=27.88 Aligned_cols=620 Identities=14% Similarity=0.133 Sum_probs=270.5
Q ss_pred EECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCC
Q ss_conf 92998999999999998579980998572246701004899899999999999984124468876999566785236998
Q gi|254780947|r 45 ICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVN 124 (1187)
Q Consensus 45 I~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp 124 (1187)
T Consensus 102 TGEGKTL~atlp~ylnaL~gk-gVhvVTvNdYL--------A~RDae~m~~l~~~LGLs----vG~~~~~m~~~e----k 164 (822)
T COG0653 102 TGEGKTLVATLPAYLNALAGK-GVHVVTVNDYL--------ARRDAEWMGPLYEFLGLS----VGVILAGMSPEE----K 164 (822)
T ss_pred CCCCHHHHHHHHHHHHHCCCC-CCEEEEEHHHH--------HHHCHHHHHHHHHHCCCC----EEECCCCCCHHH----H
T ss_conf 377359998899999723899-74895004877--------442899989999876882----322358898678----6
Q ss_pred HHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCEEEEEEEEECCC
Q ss_conf 66885154899409741999999999982884554521783165457475730698887268863487221015451374
Q gi|254780947|r 125 IMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSST 204 (1187)
Q Consensus 125 ~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~PiRIEFFGDeIESIR~FDp~T 204 (1187)
T Consensus 165 ~~aY-~~DItY~TnnElGFDYLRDNm~---~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG--~~~~~~~~Y~~~~ 238 (822)
T COG0653 165 RAAY-ACDITYGTNNELGFDYLRDNMV---TSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG--PAEDSSELYKKVD 238 (822)
T ss_pred HHHH-HCCCEECCCCCCCCCHHHHHHH---CCHHHHHHCCCCEEEECCHHHEEEECCCCCEEEEC--CCCCCCHHHHHHH
T ss_conf 8887-3375430550017552221432---05877550368838875514400000366523216--6656725999999
Q ss_pred C--CCCCCCCEEEEEC-CCCEECCHHHHHHHHHHHHHHCCCCHH----HCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 8--5312221699943-773217999999999999974173700----15777899778987887776777614876767
Q gi|254780947|r 205 Q--RTIREISIFEINT-LSEVMLTSQNISRFRENYLANFGTTTQ----EDPLYVAISQGRRYPGMEHWLPFFYQSMETIF 277 (1187)
Q Consensus 205 Q--RSi~~i~~i~I~P-a~E~il~~e~i~~fr~~~r~~f~~~~~----~~~i~e~Is~g~~~~GiE~yLPlFye~~~tLf 277 (1187)
T Consensus 239 ~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~----------~l~~~D----~ 304 (822)
T COG0653 239 DLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAH----------ILFFRD----V 304 (822)
T ss_pred HHHHHHCCCCCEEECCHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH----------HHHHCC----C
T ss_conf 99987434545365313220331434299999984841014536677775689999878----------876328----7
Q ss_pred CCC-CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCCCC
Q ss_conf 334-6761334653589999889999999899999865222026556785021169989999975114608962675322
Q gi|254780947|r 278 PYL-SEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356 (1187)
Q Consensus 278 DYL-p~~~iii~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~~~ 356 (1187)
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~-gRr~s~GLhQAiEAKE-------gv~i~~e~~tlatITfQn~fR~y~kl~gMTGTA~t 376 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMME-GRRWSDGLHQAIEAKE-------GVEIQEENQTLATITFQNLFRLYPKLAGMTGTADT 376 (822)
T ss_pred EEEEECCEEEEEECCCCCCCC-CCCCCCHHHHHHHHHC-------CCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 169856908998456687666-8688816689999844-------88533363664468599999876887467776056
Q ss_pred CCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 2246-733776414665668200100112222000185899999999998679829999589458999998677648873
Q gi|254780947|r 357 ETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 357 ~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~ 435 (1187)
T Consensus 377 e~~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 377 EEEEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCHHHHHHHHHCCCCC
T ss_conf 78888987477126623788656778122003527988999999999999659988976731422526778998649974
Q ss_pred C-CCCCCHH-H--H--HCCCCCCEEEEECCCCCC----------CC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3-2345224-5--5--204668479998104468----------74--66568871200137311122122222221101
Q gi|254780947|r 436 I-KKINTLT-E--I--NSLLKEEIAAVILPINQG----------FE--TKHMILVTETDLLGKKIARRVVRKKNVHAQSF 497 (1187)
Q Consensus 436 ~-~~~~~~~-~--~--~~~~~~~i~i~~~~L~~G----------F~--~~kl~vITE~EIFG~k~~~r~~rkk~~~~~~i 497 (1187)
T Consensus 457 ~VLNAk~h~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGR---sG--- 530 (822)
T COG0653 457 NVLNAKNHAREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGR---AG--- 530 (822)
T ss_pred EEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHCC---CC---
T ss_conf 044043679999987612788866316532467752036897789997078568732542156777775045---55---
Q ss_pred CCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEE------ECCCCEEEEEHHHHHHHHHHCC-CCCCCCCCCC
Q ss_conf 22444032351120355423311231014566666359999------8699879966675211110036-7888532343
Q gi|254780947|r 498 FDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELH------YADNAKLFVPVENIDLISRYST-EITTVTLDKL 570 (1187)
Q Consensus 498 ~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~Ie------Ya~~DkLYVPv~~l~lIskYg~-~~~~p~L~kL 570 (1187)
T Consensus 531 ------RQGDp--------------------G~S~F~lSleD~L~r~F~~-d~~~~~------~~~l~~~~~e-~i~~~~ 576 (822)
T COG0653 531 ------RQGDP--------------------GSSRFYLSLEDDLMRRFAS-DRLPAL------MDKLGLKEGE-AIESKM 576 (822)
T ss_pred ------CCCCC--------------------CHHHHHHHHHHHHHHHHCC-HHHHHH------HHHHCCCCCC-CCCCHH
T ss_conf ------68996--------------------4331023238999987372-456778------7764486567-565188
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-CCCCCCCC-HHHHHHHHHH----CCCCCCHHHHHH
Q ss_conf 4034899999999999999999999-----------99988740-15677878-4678989984----888887448999
Q gi|254780947|r 571 GGSAWKTRKANLKKRLEDLAQKLVD-----------IAAKRAIH-SVPPLMVS-QDLYSQFIKR----FPHVETEDQEKA 633 (1187)
Q Consensus 571 Gg~~W~k~K~Kakk~v~diA~eLl~-----------lyA~R~~~-~g~~f~~d-~~~~~eFe~~----FpyeET~DQ~~A 633 (1187)
T Consensus 577 ~~~~ie~aQk~vE~~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d 656 (822)
T COG0653 577 VTRAVERAQRKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEALDLSEFISKMIEDVIKALVGEYIPPPQQAELWD 656 (822)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999988999970588187667777578899899999988877766667899999999999998503578500221321
Q ss_pred HHHHHHHCCCCCCCCEEEE-CCCCCC-HHHHH--HHHHHHHHCCCCEEEEEECHHHHH----------HHHHHHHHHHHC
Q ss_conf 9999876059885414431-665432-48999--999987511275499982436655----------589999998606
Q gi|254780947|r 634 IDAVIQDLSSGRLMDRLIC-GDVGFG-KTEIA--LRAAFIAVMNGLQVAVIAPTTLLV----------RQHFRLFSERFQ 699 (1187)
Q Consensus 634 I~eV~~Dmes~~PMDRLiC-GDVGfG-KTEVA--~RAafkav~~gkQvavlvPTTiLa----------~QH~~tf~~Rf~ 699 (1187)
T Consensus 657 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~e~i~~~~~~~~~~k~~--~~~~~~~~~~r~v~l~~iD~~W~ehl~~md 734 (822)
T COG0653 657 LEGLIDELKGTVHPDLPINKSDLEDEAEEELAERILKAADEAYDKKEE--VGPEAMREFERYVMLQVLDYLWREHLDAMD 734 (822)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999986532754105777652254899999999999999875412--389999999999999988677898899999
Q ss_pred CCCCCEEEECCCCCCHH---HHHHHHHHCCCCCEEEEECHHHHCC-CCCCCCCCEEEEECHHH
Q ss_conf 78983354106663025---6777753122576089852065427-85202365699722233
Q gi|254780947|r 700 GFSVRIASISRFVQTKE---AALHKKSITEGQVDIVIGTHALLNP-KITFANLGLIIIDEEQH 758 (1187)
Q Consensus 700 ~~pv~i~~lsRf~~~~e---~~~i~~~l~~G~idiviGTH~ll~~-~v~f~~LgLliiDEEqr 758 (1187)
T Consensus 735 ~Lr~~I~lR~y~qk~Pl~eyk~e~~~~Fe~m~~~i~~~~~~~l~~~~~~~-------~~~~~~ 790 (822)
T COG0653 735 ALREGIHLRGYAQKDPLIEYKREAFELFEDMLEDIKEDVVKRLFKVQVAE-------VEEEDR 790 (822)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCHH
T ss_conf 99998546766168808899999999999999888999999997145343-------331125