HHsearch alignment for GI: 254780947 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=99.86 E-value=1.3e-18 Score=162.26 Aligned_cols=315 Identities=21% Similarity=0.259 Sum_probs=223.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHC
Q ss_conf 84888887448999999987605988541443166543248999999987511275499982436655589999998606
Q gi|254780947|r 620 KRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQ 699 (1187)
Q Consensus 620 ~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~ 699 (1187)
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv~~~~L~~Qw~~~~~~~~- 104 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLVPTKELLDQWAEALKKFL- 104 (442)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHHHHHC-
T ss_conf 235788859999999999962225--7867999679998899999999982698---8999782999999999999734-
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCC---CCCC--CCCEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 7898335410666302567777531225760898520654278---5202--3656997222330088899886316788
Q gi|254780947|r 700 GFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPK---ITFA--NLGLIIIDEEQHFGVKHKEALKETHTGV 774 (1187)
Q Consensus 700 ~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~---v~f~--~LgLliiDEEqrFGV~~Ke~lk~~~~~v 774 (1187)
T Consensus 105 ~~~~~~g~~~~-----~~~~~~~------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~ 173 (442)
T COG1061 105 LLNDEIGIYGG-----GEKELEP------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA 173 (442)
T ss_pred CCCCCCCEECC-----CCCCCCC------CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 88676603368-----7233577------748999838976415555403566675999752457847799999975103
Q ss_pred C-EEEEECCCCCHHHH------HHHHC--CCCCCEEECCCCCCC-CEEEEEEE----------CCHHHHH----------
Q ss_conf 4-89995353408899------99712--225412201578877-53799985----------7978989----------
Q gi|254780947|r 775 H-VLTLSATPIPRTLQ------LAITG--VRELSLISMPPINRI-ACRTSISI----------FDPLVVR---------- 824 (1187)
Q Consensus 775 d-vLtlsATPIPRTL~------msl~g--~rd~S~i~tpP~~R~-~v~T~v~~----------~~~~~i~---------- 824 (1187)
T Consensus 174 ~~~LGLTATp~-R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 174 YPRLGLTATPE-REDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred CEEEEEECCCC-CCCCCCHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 10467714872-44877524877405755673358998337875774999986236628777403155555555543100
Q ss_pred ------------------HHHHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf ------------------99998987---188599982644692889999986165464888613467478999999996
Q gi|254780947|r 825 ------------------ETLMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFY 883 (1187)
Q Consensus 825 ------------------~ai~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~ 883 (1187)
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~--~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA--PGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCC--CCC-EEEEECCCCHHHHHHHHHHHH
T ss_conf 13456777776642899999999987532688669997577999999998626--774-246657899889999999987
Q ss_pred CCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCC--CCC---CEEEEEECCCCCCCHHHHHHHH
Q ss_conf 388757976102003633223326676250235886045532210356--767---3699996688888988999999
Q gi|254780947|r 884 EGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRS--KIA---SFALFLLPENRPLTAAAQKRLR 956 (1187)
Q Consensus 884 ~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs--~~~---ayayl~~~~~~~l~~~a~kRL~ 956 (1187)
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRP-TGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCEEEEECC-CCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 089529999614126657888757999779-98799999996166347889996599999645676443326666433