HHsearch alignment for GI: 254780947 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=100.00 E-value=0 Score=3047.97 Aligned_cols=1119 Identities=42% Similarity=0.719 Sum_probs=1043.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHH
Q ss_conf 860898037652279999999862-9989999299899999999999857998099857224670100489989999999
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEIARL-GLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRL 93 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l~~~-~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl 93 (1187)
T Consensus 9 ~~~~~l~gl~~~~~a~~~a~l~~~~~~~~~~vt~~~~~a~~l~~~L~-~~~~~~v~~~P~~e~lpyd~~sp~~d~~~~Rl 87 (1139)
T COG1197 9 GDPLLLGGLSGGAKALLIAALAEEKPNPVLLVTADLQEADRLAEDLR-FFPDQPVLLLPDWETLPYDRFSPSQDIVSSRL 87 (1139)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH-HCCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 77557506781367999999986368882899589999999999998-57887358777744565644688704799999
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCE
Q ss_conf 99999841244688769995667852369986688515489940974199999999998288455452178316545747
Q gi|254780947|r 94 SCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGI 173 (1187)
Q Consensus 94 ~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgI 173 (1187)
T Consensus 88 ~~L~~L~~~~----~~i~v~~~~all~~lpp~~~~~~~~l~l~~G~~~d~~~l~~~L~~~GY~~v~~V~~~GEfsvRG~I 163 (1139)
T COG1197 88 EALRRLAQGK----KGIVVVPVNALLQKLPPPDFLEENSLTLKVGEELDLDDLEARLVRAGYERVDMVMEPGEFAVRGGI 163 (1139)
T ss_pred HHHHHHHCCC----CCEEEEEHHHHHHHCCCHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCEEECCCE
T ss_conf 9999987279----988998879953346996676335389624872689999999998097003320245624511654
Q ss_pred EEEECCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHHCCCCHHHCHHHHHH
Q ss_conf 57306988872688634872210154513748531222169994377321799999999999997417370015777899
Q gi|254780947|r 174 LDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAI 253 (1187)
Q Consensus 174 IDIFp~~~~~PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~i~~fr~~~r~~f~~~~~~~~i~e~I 253 (1187)
T Consensus 164 lDIfp~~~e~P~RieffgdeIesIR~Fd~~tQrS~~~v~~i~l~Pa~e~~l~~~~~~~~~~~~~~~f-~~~~~~~~~~~~ 242 (1139)
T COG1197 164 LDIFPPGSEEPYRIEFFGDEIESIRSFDPETQRSLEEVEEIELLPASEFILDEEAIEAFRKQYLETF-EPKRDDALYEAL 242 (1139)
T ss_pred EEECCCCCCCCEEEEECCCCEEEEECCCHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC-CCCCCHHHHHHH
T ss_conf 7860489888679996587010245258565145245544997462114669789999999887640-566423789998
Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
Q ss_conf 778987887776777614876767334676133-4653589999889999999899999865222026556785021169
Q gi|254780947|r 254 SQGRRYPGMEHWLPFFYQSMETIFPYLSEFCII-TDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYL 332 (1187)
Q Consensus 254 s~g~~~~GiE~yLPlFye~~~tLfDYLp~~~ii-i~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl 332 (1187)
T Consensus 243 ~~g~~~~g~e~~lplfy~~~~~l~dylp~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~l 315 (1139)
T COG1197 243 SSGRRFAGLEYFLPLFYEDLATLFDYLPKNTLIVVDERVLEAAEEFEKEVADFYEARLSDG-------EYPPLPPEALYL 315 (1139)
T ss_pred HCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCHHHHHC
T ss_conf 5589854289876877545078998556688176656678999999888999999773145-------567888376315
Q ss_pred CHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHH----HHHHHHHHHHHCC
Q ss_conf 989999975114608962675322224673377641466566820010011222200018589----9999999998679
Q gi|254780947|r 333 NYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFD----KFLSHVAQQAQKG 408 (1187)
Q Consensus 333 ~~~el~~ll~~~~~ii~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~----~L~~~I~~~~k~g 408 (1187)
T Consensus 316 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~~~~~~~~f~~q~~~~~~~l~~~i~~~~~~- 377 (1139)
T COG1197 316 SAEELFELLKPVPRI-SLFPEHLPELSAEEII----------------NLDPLPDLAFFGQHKEPLDALRKEIERFRGG- 377 (1139)
T ss_pred CHHHHHHHHCCCCCC-CCCCCCCCCCCHHHCC----------------CCCCCCHHHHHCCCCHHHHHHHHHHHHHCCC-
T ss_conf 799998874344200-2343345431021024----------------4343411333212312779999999984468-
Q ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCC--EEEEECCCCCCCCCCCCC
Q ss_conf 829999589458999998677648873323452245520466847999810446874665--688712001373111221
Q gi|254780947|r 409 IKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKH--MILVTETDLLGKKIARRV 486 (1187)
Q Consensus 409 ~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~~~~~~~~~~i~i~~~~L~~GF~~~k--l~vITE~EIFG~k~~~r~ 486 (1187)
T Consensus 378 ~~v~~~a~~~~~~erl~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~~~~l~~GF~~~~~~l~vItE~el~g~r~~~~~ 453 (1139)
T COG1197 378 YKVIILAESEGRRERLLELLAEHDIPPQK-VDRLDEAK---KGEVYIAVGPLESGFILPDEKLAVITESELLGSRVKRRR 453 (1139)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCC-CCHHHHCC---CCCEEEEECCHHCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 53999965765589999999747998434-76233214---563378630020261048851899963686656765556
Q ss_pred C-CCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHH-CCCCCC
Q ss_conf 2-22222211012244403235112035542331123101456666635999986998799666752111100-367888
Q gi|254780947|r 487 V-RKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRY-STEITT 564 (1187)
Q Consensus 487 ~-rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~DkLYVPv~~l~lIskY-g~~~~~ 564 (1187)
T Consensus 454 ~~k~~~~~~~~i~~~~eL~~Gd~VVH~~HGIGrflgl~tl~~~g~~~dyL~l~Ya~~dkLyVPVeql~lisrY~g~~~~~ 533 (1139)
T COG1197 454 RRKRRKKNATRIKDLAELKPGDYVVHIDHGIGRFLGLETLEVGGIERDYLELEYAGEDKLYVPVEQLHLISRYVGASDEA 533 (1139)
T ss_pred HHHHHHCCHHHHCCHHHCCCCCEEEECCCCCEEEEEEEEEECCCCCCCEEEEEECCCCEEEEEHHHHHHHHHCCCCCCCC
T ss_conf 65542010132214543788984775157713442048986188763148999769973897777856776446899887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 53234340348999999999999999999999998874015677878467898998488888744899999998760598
Q gi|254780947|r 565 VTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSG 644 (1187)
Q Consensus 565 p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~ 644 (1187)
T Consensus 534 p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~ 613 (1139)
T COG1197 534 PKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESG 613 (1139)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 75423474778999999999999999999999998730568787998589999985499857878999999999886069
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 85414431665432489999999875112754999824366555899999986067898335410666302567777531
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSI 724 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l 724 (1187)
T Consensus 614 kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~l 693 (1139)
T COG1197 614 KPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGL 693 (1139)
T ss_pred CCCHHEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 86610256576875999999999998637974999926078689989999987338982588860557889999999998
Q ss_pred CCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECC
Q ss_conf 22576089852065427852023656997222330088899886316788489995353408899997122254122015
Q gi|254780947|r 725 TEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMP 804 (1187)
Q Consensus 725 ~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tp 804 (1187)
T Consensus 694 a~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP 773 (1139)
T COG1197 694 AEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP 773 (1139)
T ss_pred HCCCCCEEEECHHHHCCCCEEECCCEEEEECHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCHHHHHCCCC
T ss_conf 56984589963176478967704764897443532711789998775057289741788754477777443033111479
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 78877537999857978989999989871885999826446928899999861654648886134674789999999963
Q gi|254780947|r 805 PINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYE 884 (1187)
Q Consensus 805 P~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~ 884 (1187)
T Consensus 774 P~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 774 PEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 98772128887158828999999998715987999943331299999999985984688885258888999999999972
Q ss_pred CCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 88757976102003633223326676250235886045532210356767369999668888898899999999972556
Q gi|254780947|r 885 GQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTL 964 (1187)
Q Consensus 885 ~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~l 964 (1187)
T Consensus 854 g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~L 933 (1139)
T COG1197 854 GEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTEL 933 (1139)
T ss_pred CCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 88888988234304767778755889654334578888751654776762899996267554587899999999723323
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHH
Q ss_conf 52489999998511630004611155389833899999999999998288876766665256548851167343899888
Q gi|254780947|r 965 GAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIEASVMIPESYVSDINL 1044 (1187)
Q Consensus 965 GsGf~iA~~DleiRGaG~llG~~QsG~i~~vG~~ly~~ml~~av~~~kg~~~~~~~~~~~~i~~~~~~~ip~~yi~d~~~ 1044 (1187)
T Consensus 934 GaGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf~LY~~mLeeAI~~lk~~~e~~~~~~~~eIdL~~~a~iPe~YI~d~~~ 1013 (1139)
T COG1197 934 GAGFKLAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLEEAIAALKGSLEVLEEEKEVEIDLPVPAFIPEDYIPDDNL 1013 (1139)
T ss_pred CCHHHHHHCCHHCCCCCCCCCCCCCCCHHEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHH
T ss_conf 75178875201004541346754567610122999999999999987367741015887058567777288355447888
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCHHHHHH
Q ss_conf 99999987508998999999999776248898899999999999999998697599960985999963888889899999
Q gi|254780947|r 1045 RLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQ 1124 (1187)
Q Consensus 1045 rl~~Y~ri~~~~~~~~~~~~~~el~drfG~~P~~~~~l~~~~~lk~~~~~~~i~~i~~~~~~~~~~f~~~~~~~~~~~~~ 1124 (1187)
T Consensus 1014 rl~~YkRi~~~~s~~el~~i~~EliDRFG~lP~ev~~Ll~i~~lk~la~~lgI~~i~~~~~~~~i~f~~~~~~~~~~l~~ 1093 (1139)
T COG1197 1014 RLELYKRLANAESEEELEEIKEELIDRFGPLPDEVKNLLDIAELKLLARKLGIEKIDAGENGVVIEFSKNEQVNPKKLIK 1093 (1139)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 99999998746899999999999997558997899999999999999998097253057854899963445658899998
Q ss_pred HHHHCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99837880999189816999718998899999999999999863
Q gi|254780947|r 1125 YIAQQKGKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHLINMT 1168 (1187)
Q Consensus 1125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 1168 (1187)
T Consensus 1094 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~L~~~~ 1137 (1139)
T COG1197 1094 LLQKQPLKAKLKGDTKLLFIKDLIEPEERLDAVAKLLKALAELA 1137 (1139)
T ss_pred HHHCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 86205623422798467773456789999999999999987521