HHsearch alignment for GI: 254780947 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=99.96 E-value=7.6e-26 Score=217.91 Aligned_cols=327 Identities=25% Similarity=0.300 Sum_probs=275.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 78784678989984888887448999999987605988541443166543248999999987511275499982436655
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
T Consensus 181 ~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~--~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Lt 258 (730)
T COG1198 181 EPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSL--GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALT 258 (730)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 6777522346565431103889999999999750--56665367677788589999999999997598799995653456
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHH----
Q ss_conf 5899999986067898335410666302567777531225760898520654278520236569972223300888----
Q gi|254780947|r 688 RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKH---- 763 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~---- 763 (1187)
T Consensus 259 pq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 259 PQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--LPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHHHHHHHHC---CCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC--CCHHHCCEEEEECCCCCCCCCCCCC
T ss_conf 999999999867---87453146579278999999985597159997122330--7231257699702456432477777
Q ss_pred ------HHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC-CCE------EEEEEECC---HHHHHHHH
Q ss_conf ------998863167884899953534088999971222541220157887-753------79998579---78989999
Q gi|254780947|r 764 ------KEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR-IAC------RTSISIFD---PLVVRETL 827 (1187)
Q Consensus 764 ------Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R-~~v------~T~v~~~~---~~~i~~ai 827 (1187)
T Consensus 334 rYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 334 RYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 76789999999886099889826887789998665385589970354555678762587356665546775799999999
Q ss_pred HHHHHHCCEEEEEECCCC------------------------------------------------------------CH
Q ss_conf 989871885999826446------------------------------------------------------------92
Q gi|254780947|r 828 MREYYRGGQSFYVCPRLS------------------------------------------------------------DL 847 (1187)
Q Consensus 828 ~rEl~RgGQvf~v~nrv~------------------------------------------------------------~i 847 (1187)
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCH
T ss_conf 99984298689997167765400425689802489999512786479806707799989988779899997369964619
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCC--HHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHC-C-------
Q ss_conf 889999986165464888613467--478999999996388757976102003633223326676250235-8-------
Q gi|254780947|r 848 EKCYTFLQSEVPELKIAMAHGQMS--PKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF-G------- 917 (1187)
Q Consensus 848 ~~~~~~l~~l~p~~~i~vaHGqm~--~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~-G------- 917 (1187)
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRAs 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCEEEEEEECHHHHCCCCCCHH
T ss_conf 99999999878999479984666664356899999975799886634166642788666318999963143158884357
Q ss_pred ---CCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf ---860455322103567673699996
Q gi|254780947|r 918 ---LAQLYQLRGRVGRSKIASFALFLL 941 (1187)
Q Consensus 918 ---LaqlyQlrGRVGRs~~~ayayl~~ 941 (1187)
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT 600 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQT 600 (730)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 899999999975532678898699996