HHsearch alignment for GI: 254780947 and conserved domain: COG1200

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=100.00  E-value=0  Score=920.77  Aligned_cols=413  Identities=38%  Similarity=0.623  Sum_probs=387.9

Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf             99999887401567787846789899848888874489999999876059885414431665432489999999875112
Q gi|254780947|r  594 VDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN  673 (1187)
Q Consensus       594 l~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~  673 (1187)
T Consensus       231 ~~~r~~~~~~~~~~~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~  310 (677)
T COG1200         231 LLRRAKRQKRSGIPLPANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA  310 (677)
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             99999875226888886479999999858997678999999999866448666678752676777899999999999872


Q ss_pred             CCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf             75499982436655589999998606789833541066630256777753122576089852065427852023656997
Q gi|254780947|r  674 GLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII  753 (1187)
Q Consensus       674 gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii  753 (1187)
T Consensus       311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi  390 (677)
T COG1200         311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII  390 (677)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCEEECCEEEEEE
T ss_conf             88168866379999999999998766519748986446650679999998747998979972212204504420238997


Q ss_pred             ECHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECC-HHHHHHHHHHHH
Q ss_conf             2223300888998863167-88489995353408899997122254122015788775379998579-789899999898
Q gi|254780947|r  754 DEEQHFGVKHKEALKETHT-GVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFD-PLVVRETLMREY  831 (1187)
Q Consensus       754 DEEqrFGV~~Ke~lk~~~~-~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~-~~~i~~ai~rEl  831 (1187)
T Consensus       391 DEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei  470 (677)
T COG1200         391 DEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEI  470 (677)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf             25210229999999973789996799957985078898886146301112579899740899964444799999999999


Q ss_pred             HHCCEEEEEECCCCCH--------HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCC
Q ss_conf             7188599982644692--------88999998616546488861346747899999999638875797610200363322
Q gi|254780947|r  832 YRGGQSFYVCPRLSDL--------EKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLP  903 (1187)
Q Consensus       832 ~RgGQvf~v~nrv~~i--------~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip  903 (1187)
T Consensus       471 ~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP  550 (677)
T COG1200         471 AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP  550 (677)
T ss_pred             HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
T ss_conf             74997999952535433113654999999999870546367775689867799999999808876899813899523578


Q ss_pred             CCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             33266762502358860455322103567673699996688888988999999999725565248999999851163000
Q gi|254780947|r  904 KANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNL  983 (1187)
Q Consensus       904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~~DleiRGaG~l  983 (1187)
T Consensus       551 nATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~--~~~~a~~RL~im~~t~D---GF~IAE~DLklRGpGe~  625 (677)
T COG1200         551 NATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPP--LSEVAKQRLKIMRETTD---GFVIAEEDLKLRGPGEL  625 (677)
T ss_pred             CCEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCC--CCHHHHHHHHHHHHCCC---CCEEHHHHHHCCCCCCC
T ss_conf             87079996543303788887526557887544899996798--77568999998874487---60104656741388654


Q ss_pred             CCCCCCCCHHHHHHHHH--HHHHHHHHHHH
Q ss_conf             46111553898338999--99999999998
Q gi|254780947|r  984 LGEEQSGHIREIGFELY--QKMLEETVASI 1011 (1187)
Q Consensus       984 lG~~QsG~i~~vG~~ly--~~ml~~av~~~ 1011 (1187)
T Consensus       626 lG~rQSG~~~f~~Adl~~D~~ile~ar~~a  655 (677)
T COG1200         626 LGTRQSGLPEFRVADLVRDYDILEEARKDA  655 (677)
T ss_pred             CCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf             687556886547730875699999999999