HHsearch alignment for GI: 254780947 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=96.68 E-value=0.017 Score=37.93 Aligned_cols=119 Identities=13% Similarity=0.302 Sum_probs=86.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHH--------HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHH
Q ss_conf 8541443166543248999999987511275499982436--------65558999999860678983354106663025
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTT--------LLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTT--------iLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e 716 (1187)
T Consensus 447 kpI~T~~i~~~~~~~v~e~i~~e---i~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~--~vgL~HGrm~~~e 521 (677)
T COG1200 447 KPITTVVIPHERRPEVYERIREE---IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPEL--KVGLVHGRMKPAE 521 (677)
T ss_pred CCEEEEEECCCCHHHHHHHHHHH---HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEEECCCCHHH
T ss_conf 74089996444479999999999---974997999952535433113654999999999870546--3677756898677
Q ss_pred HHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 67777531225760898520654278520236569972223300888998863
Q gi|254780947|r 717 AALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKE 769 (1187)
Q Consensus 717 ~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~ 769 (1187)
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTT-VIEVGVdVPnATvMVIe~AERFGLaQLHQLRG 573 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATT-VIEVGVDVPNATVMVIENAERFGLAQLHQLRG 573 (677)
T ss_pred HHHHHHHHHCCCCCEEEEEE-EEEECCCCCCCEEEEEECHHHHHHHHHHHHCC
T ss_conf 99999999808876899813-89952357887079996543303788887526