HHsearch alignment for GI: 254780947 and conserved domain: COG1200

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=96.68  E-value=0.017  Score=37.93  Aligned_cols=119  Identities=13%  Similarity=0.302  Sum_probs=86.9

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHH--------HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHH
Q ss_conf             8541443166543248999999987511275499982436--------65558999999860678983354106663025
Q gi|254780947|r  645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTT--------LLVRQHFRLFSERFQGFSVRIASISRFVQTKE  716 (1187)
Q Consensus       645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTT--------iLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e  716 (1187)
T Consensus       447 kpI~T~~i~~~~~~~v~e~i~~e---i~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~--~vgL~HGrm~~~e  521 (677)
T COG1200         447 KPITTVVIPHERRPEVYERIREE---IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPEL--KVGLVHGRMKPAE  521 (677)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHH---HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEEECCCCHHH
T ss_conf             74089996444479999999999---974997999952535433113654999999999870546--3677756898677


Q ss_pred             HHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf             67777531225760898520654278520236569972223300888998863
Q gi|254780947|r  717 AALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKE  769 (1187)
Q Consensus       717 ~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~  769 (1187)
T Consensus       522 Kd~vM~~Fk~~e~~ILVaTT-VIEVGVdVPnATvMVIe~AERFGLaQLHQLRG  573 (677)
T COG1200         522 KDAVMEAFKEGEIDILVATT-VIEVGVDVPNATVMVIENAERFGLAQLHQLRG  573 (677)
T ss_pred             HHHHHHHHHCCCCCEEEEEE-EEEECCCCCCCEEEEEECHHHHHHHHHHHHCC
T ss_conf             99999999808876899813-89952357887079996543303788887526