HHsearch alignment for GI: 254780947 and conserved domain: COG1202

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=99.62  E-value=1.2e-13  Score=123.79  Aligned_cols=312  Identities=22%  Similarity=0.304  Sum_probs=233.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHHHHHHCCCC
Q ss_conf             88874489999999876059885414431665432489999999875112-75499982436655589999998606789
Q gi|254780947|r  624 HVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN-GLQVAVIAPTTLLVRQHFRLFSERFQGFS  702 (1187)
Q Consensus       624 yeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~-gkQvavlvPTTiLa~QH~~tf~~Rf~~~p  702 (1187)
T Consensus       215 ~eLlPVQ~laVe~GL---LeG--~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg  289 (830)
T COG1202         215 EELLPVQVLAVEAGL---LEG--ENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLG  289 (830)
T ss_pred             CEECCHHHHHHHHCC---CCC--CCEEEEECCCCCCCHHHHHHCCHHHHHCCCEEEEEEHHHHHHCCHHHHHHHHHHCCC
T ss_conf             443023465566144---057--734999405777514777637387883787289973168763111899999865016


Q ss_pred             CCEEE---ECCCCCCHHHHHHHHHHCCCCCEEEEEC----HHHHCCCCCCCCCCEEEEECHHHHHH-----HHH---HHH
Q ss_conf             83354---1066630256777753122576089852----06542785202365699722233008-----889---988
Q gi|254780947|r  703 VRIAS---ISRFVQTKEAALHKKSITEGQVDIVIGT----HALLNPKITFANLGLIIIDEEQHFGV-----KHK---EAL  767 (1187)
Q Consensus       703 v~i~~---lsRf~~~~e~~~i~~~l~~G~idiviGT----H~ll~~~v~f~~LgLliiDEEqrFGV-----~~K---e~l  767 (1187)
T Consensus       290 lkvairVG~srIk~~~~p---v~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RL  366 (830)
T COG1202         290 LKVAIRVGMSRIKTREEP---VVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRL  366 (830)
T ss_pred             CEEEEEECHHHHCCCCCC---CCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHCCCCHHHHHHHH
T ss_conf             627888423452246775---35689987767986111078998707855544359965012044010163235289999


Q ss_pred             HHCCCCCCEEEEECCC-CCHHHHHHHHCCCCCCEEECC--CCCCCCEEEEEEECCHHHHHHHHHHHHHH------CCEEE
Q ss_conf             6316788489995353-408899997122254122015--78877537999857978989999989871------88599
Q gi|254780947|r  768 KETHTGVHVLTLSATP-IPRTLQLAITGVRELSLISMP--PINRIACRTSISIFDPLVVRETLMREYYR------GGQSF  838 (1187)
Q Consensus       768 k~~~~~vdvLtlsATP-IPRTL~msl~g~rd~S~i~tp--P~~R~~v~T~v~~~~~~~i~~ai~rEl~R------gGQvf  838 (1187)
T Consensus       367 r~l~~~AQ~i~LSATVgNp~elA~~l-~a~lV-~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtI  444 (830)
T COG1202         367 RYLFPGAQFIYLSATVGNPEELAKKL-GAKLV-LYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTI  444 (830)
T ss_pred             HHHCCCCEEEEEEEECCCHHHHHHHH-CCEEE-EECCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             98677774999874338869999883-87258-65588787367066404816777899999999975441137677369


Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEE----ECHH
Q ss_conf             982644692889999986165464888613467478999999996388757976102003633223326676----2502
Q gi|254780947|r  839 YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIV----QRAD  914 (1187)
Q Consensus       839 ~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii----~~ad  914 (1187)
T Consensus       445 VFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~  521 (830)
T COG1202         445 VFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP-ASQVIFESLAMGIE  521 (830)
T ss_pred             EEECCHHHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCC-HHHHHHHHHHCCCC
T ss_conf             9942166699999886107--86665443798678888899997608755576424564478875-18999999871043


Q ss_pred             HCCCCHHHHHHHHCCCC--CCCCEEEEEECCCCCCC
Q ss_conf             35886045532210356--76736999966888889
Q gi|254780947|r  915 MFGLAQLYQLRGRVGRS--KIASFALFLLPENRPLT  948 (1187)
Q Consensus       915 ~~GLaqlyQlrGRVGRs--~~~ayayl~~~~~~~l~  948 (1187)
T Consensus       522 WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~  557 (830)
T COG1202         522 WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH  557 (830)
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHC
T ss_conf             278999999850469987233733999955770111