HHsearch alignment for GI: 254780947 and conserved domain: COG1202
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=99.62 E-value=1.2e-13 Score=123.79 Aligned_cols=312 Identities=22% Similarity=0.304 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88874489999999876059885414431665432489999999875112-75499982436655589999998606789
Q gi|254780947|r 624 HVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN-GLQVAVIAPTTLLVRQHFRLFSERFQGFS 702 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~-gkQvavlvPTTiLa~QH~~tf~~Rf~~~p 702 (1187)
T Consensus 215 ~eLlPVQ~laVe~GL---LeG--~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 215 EELLPVQVLAVEAGL---LEG--ENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred CEECCHHHHHHHHCC---CCC--CCEEEEECCCCCCCHHHHHHCCHHHHHCCCEEEEEEHHHHHHCCHHHHHHHHHHCCC
T ss_conf 443023465566144---057--734999405777514777637387883787289973168763111899999865016
Q ss_pred CCEEE---ECCCCCCHHHHHHHHHHCCCCCEEEEEC----HHHHCCCCCCCCCCEEEEECHHHHHH-----HHH---HHH
Q ss_conf 83354---1066630256777753122576089852----06542785202365699722233008-----889---988
Q gi|254780947|r 703 VRIAS---ISRFVQTKEAALHKKSITEGQVDIVIGT----HALLNPKITFANLGLIIIDEEQHFGV-----KHK---EAL 767 (1187)
Q Consensus 703 v~i~~---lsRf~~~~e~~~i~~~l~~G~idiviGT----H~ll~~~v~f~~LgLliiDEEqrFGV-----~~K---e~l 767 (1187)
T Consensus 290 lkvairVG~srIk~~~~p---v~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RL 366 (830)
T COG1202 290 LKVAIRVGMSRIKTREEP---VVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRL 366 (830)
T ss_pred CEEEEEECHHHHCCCCCC---CCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHCCCCHHHHHHHH
T ss_conf 627888423452246775---35689987767986111078998707855544359965012044010163235289999
Q ss_pred HHCCCCCCEEEEECCC-CCHHHHHHHHCCCCCCEEECC--CCCCCCEEEEEEECCHHHHHHHHHHHHHH------CCEEE
Q ss_conf 6316788489995353-408899997122254122015--78877537999857978989999989871------88599
Q gi|254780947|r 768 KETHTGVHVLTLSATP-IPRTLQLAITGVRELSLISMP--PINRIACRTSISIFDPLVVRETLMREYYR------GGQSF 838 (1187)
Q Consensus 768 k~~~~~vdvLtlsATP-IPRTL~msl~g~rd~S~i~tp--P~~R~~v~T~v~~~~~~~i~~ai~rEl~R------gGQvf 838 (1187)
T Consensus 367 r~l~~~AQ~i~LSATVgNp~elA~~l-~a~lV-~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtI 444 (830)
T COG1202 367 RYLFPGAQFIYLSATVGNPEELAKKL-GAKLV-LYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTI 444 (830)
T ss_pred HHHCCCCEEEEEEEECCCHHHHHHHH-CCEEE-EECCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 98677774999874338869999883-87258-65588787367066404816777899999999975441137677369
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEE----ECHH
Q ss_conf 982644692889999986165464888613467478999999996388757976102003633223326676----2502
Q gi|254780947|r 839 YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIV----QRAD 914 (1187)
Q Consensus 839 ~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii----~~ad 914 (1187)
T Consensus 445 VFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~ 521 (830)
T COG1202 445 VFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP-ASQVIFESLAMGIE 521 (830)
T ss_pred EEECCHHHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCC-HHHHHHHHHHCCCC
T ss_conf 9942166699999886107--86665443798678888899997608755576424564478875-18999999871043
Q ss_pred HCCCCHHHHHHHHCCCC--CCCCEEEEEECCCCCCC
Q ss_conf 35886045532210356--76736999966888889
Q gi|254780947|r 915 MFGLAQLYQLRGRVGRS--KIASFALFLLPENRPLT 948 (1187)
Q Consensus 915 ~~GLaqlyQlrGRVGRs--~~~ayayl~~~~~~~l~ 948 (1187)
T Consensus 522 WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~ 557 (830)
T COG1202 522 WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH 557 (830)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHC
T ss_conf 278999999850469987233733999955770111