HHsearch alignment for GI: 254780947 and conserved domain: COG1203

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.72  E-value=8e-14  Score=125.25  Aligned_cols=310  Identities=22%  Similarity=0.213  Sum_probs=213.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHCC----CCEEEEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf             744899999998760598854-14431665432489999999875112----7549998243665558999999860678
Q gi|254780947|r  627 TEDQEKAIDAVIQDLSSGRLM-DRLICGDVGFGKTEIALRAAFIAVMN----GLQVAVIAPTTLLVRQHFRLFSERFQGF  701 (1187)
Q Consensus       627 T~DQ~~AI~eV~~Dmes~~PM-DRLiCGDVGfGKTEVA~RAafkav~~----gkQvavlvPTTiLa~QH~~tf~~Rf~~~  701 (1187)
T Consensus       197 ~~~~~~~~~~~---~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~  273 (733)
T COG1203         197 YELQEKALELI---LRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF  273 (733)
T ss_pred             HHHHHHHHHHH---HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf             35567999998---732255751899916888719999999999753113545628996558999999999998751235


Q ss_pred             CCCEE-EECCC----CCCHHH-----HHHHHHHCC-CCCEEEEECHHHHCCCCCCCC--------CCEEEEECHHHHHHH
Q ss_conf             98335-41066----630256-----777753122-576089852065427852023--------656997222330088
Q gi|254780947|r  702 SVRIA-SISRF----VQTKEA-----ALHKKSITE-GQVDIVIGTHALLNPKITFAN--------LGLIIIDEEQHFGVK  762 (1187)
Q Consensus       702 pv~i~-~lsRf----~~~~e~-----~~i~~~l~~-G~idiviGTH~ll~~~v~f~~--------LgLliiDEEqrFGV~  762 (1187)
T Consensus       274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~  353 (733)
T COG1203         274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE  353 (733)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHCCCC
T ss_conf             54331001310255651701002258881242236204522206999855740466725778876467787427541654


Q ss_pred             ----HHHHHH--HCCCCCCEEEEECCCCC--HHHHHHHHCCCCC-CEEEC-CCCCCCCEEEEE--EECCHH---HHHHHH
Q ss_conf             ----899886--31678848999535340--8899997122254-12201-578877537999--857978---989999
Q gi|254780947|r  763 ----HKEALK--ETHTGVHVLTLSATPIP--RTLQLAITGVREL-SLISM-PPINRIACRTSI--SIFDPL---VVRETL  827 (1187)
Q Consensus       763 ----~Ke~lk--~~~~~vdvLtlsATPIP--RTL~msl~g~rd~-S~i~t-pP~~R~~v~T~v--~~~~~~---~i~~ai  827 (1187)
T Consensus       354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  433 (733)
T COG1203         354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI  433 (733)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEECCHHHHCCCHHHHHHHH
T ss_conf             30899999999999689978999278997999999998503761213443233455433000001113203037766556


Q ss_pred             HHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH----HCCCCCEEEECCCEECCCCCC
Q ss_conf             9898718859998264469288999998616546488861346747899999999----638875797610200363322
Q gi|254780947|r  828 MREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAF----YEGQYDVLLSTSIVESGLDLP  903 (1187)
Q Consensus       828 ~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F----~~~~~dvLv~TtIiEsGlDip  903 (1187)
T Consensus       434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid  511 (733)
T COG1203         434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID  511 (733)
T ss_pred             HHHHCCCCCEEEEEECHHHHHHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCC
T ss_conf             77642588289999278999999999855589--5799886355766999999998887537862999834599886266


Q ss_pred             CCCEEEEECHHHCCCCHHHHHHHHCCCCC--CCCEEEEEECCCC
Q ss_conf             33266762502358860455322103567--6736999966888
Q gi|254780947|r  904 KANTMIVQRADMFGLAQLYQLRGRVGRSK--IASFALFLLPENR  945 (1187)
Q Consensus       904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~--~~ayayl~~~~~~  945 (1187)
T Consensus       512 -fd~mITe~a---PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~  551 (733)
T COG1203         512 -FDVLITELA---PIDSLIQRAGRVNRHGKKENGKIYVYNDEER  551 (733)
T ss_pred             -CCEEEECCC---CHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf             -684663478---7567999877774156666871699834667