HHsearch alignment for GI: 254780947 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.72 E-value=8e-14 Score=125.25 Aligned_cols=310 Identities=22% Similarity=0.213 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHCC----CCEEEEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf 744899999998760598854-14431665432489999999875112----7549998243665558999999860678
Q gi|254780947|r 627 TEDQEKAIDAVIQDLSSGRLM-DRLICGDVGFGKTEIALRAAFIAVMN----GLQVAVIAPTTLLVRQHFRLFSERFQGF 701 (1187)
Q Consensus 627 T~DQ~~AI~eV~~Dmes~~PM-DRLiCGDVGfGKTEVA~RAafkav~~----gkQvavlvPTTiLa~QH~~tf~~Rf~~~ 701 (1187)
T Consensus 197 ~~~~~~~~~~~---~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 197 YELQEKALELI---LRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred HHHHHHHHHHH---HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 35567999998---732255751899916888719999999999753113545628996558999999999998751235
Q ss_pred CCCEE-EECCC----CCCHHH-----HHHHHHHCC-CCCEEEEECHHHHCCCCCCCC--------CCEEEEECHHHHHHH
Q ss_conf 98335-41066----630256-----777753122-576089852065427852023--------656997222330088
Q gi|254780947|r 702 SVRIA-SISRF----VQTKEA-----ALHKKSITE-GQVDIVIGTHALLNPKITFAN--------LGLIIIDEEQHFGVK 762 (1187)
Q Consensus 702 pv~i~-~lsRf----~~~~e~-----~~i~~~l~~-G~idiviGTH~ll~~~v~f~~--------LgLliiDEEqrFGV~ 762 (1187)
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHCCCC
T ss_conf 54331001310255651701002258881242236204522206999855740466725778876467787427541654
Q ss_pred ----HHHHHH--HCCCCCCEEEEECCCCC--HHHHHHHHCCCCC-CEEEC-CCCCCCCEEEEE--EECCHH---HHHHHH
Q ss_conf ----899886--31678848999535340--8899997122254-12201-578877537999--857978---989999
Q gi|254780947|r 763 ----HKEALK--ETHTGVHVLTLSATPIP--RTLQLAITGVREL-SLISM-PPINRIACRTSI--SIFDPL---VVRETL 827 (1187)
Q Consensus 763 ----~Ke~lk--~~~~~vdvLtlsATPIP--RTL~msl~g~rd~-S~i~t-pP~~R~~v~T~v--~~~~~~---~i~~ai 827 (1187)
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEECCHHHHCCCHHHHHHHH
T ss_conf 30899999999999689978999278997999999998503761213443233455433000001113203037766556
Q ss_pred HHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH----HCCCCCEEEECCCEECCCCCC
Q ss_conf 9898718859998264469288999998616546488861346747899999999----638875797610200363322
Q gi|254780947|r 828 MREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAF----YEGQYDVLLSTSIVESGLDLP 903 (1187)
Q Consensus 828 ~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F----~~~~~dvLv~TtIiEsGlDip 903 (1187)
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred HHHHCCCCCEEEEEECHHHHHHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCC
T ss_conf 77642588289999278999999999855589--5799886355766999999998887537862999834599886266
Q ss_pred CCCEEEEECHHHCCCCHHHHHHHHCCCCC--CCCEEEEEECCCC
Q ss_conf 33266762502358860455322103567--6736999966888
Q gi|254780947|r 904 KANTMIVQRADMFGLAQLYQLRGRVGRSK--IASFALFLLPENR 945 (1187)
Q Consensus 904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~--~~ayayl~~~~~~ 945 (1187)
T Consensus 512 -fd~mITe~a---PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 512 -FDVLITELA---PIDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred -CCEEEECCC---CHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf -684663478---7567999877774156666871699834667