HHsearch alignment for GI: 254780947 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=99.62 E-value=1.7e-12 Score=114.94 Aligned_cols=320 Identities=23% Similarity=0.325 Sum_probs=222.5
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CEEEEEECHHHHHHH
Q ss_conf 4678989984888-88744899999998760598854144316654324899999998751127-549998243665558
Q gi|254780947|r 612 QDLYSQFIKRFPH-VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG-LQVAVIAPTTLLVRQ 689 (1187)
Q Consensus 612 ~~~~~eFe~~Fpy-eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g-kQvavlvPTTiLa~Q 689 (1187)
T Consensus 17 ~~~v~~i~~~~~~~el~~~qq~av~~~~~~-----~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~E 91 (766)
T COG1204 17 DDRVLEILKGDGIDELFNPQQEAVEKGLLS-----DENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEE 91 (766)
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-----CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
T ss_conf 078998860488477557899874111257-----986799767888669999999999998559838999075999999
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH----HHHCCCCC-CCCCCEEEEECHHHHHHHH-
Q ss_conf 99999986067898335410666302567777531225760898520----65427852-0236569972223300888-
Q gi|254780947|r 690 HFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH----ALLNPKIT-FANLGLIIIDEEQHFGVKH- 763 (1187)
Q Consensus 690 H~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH----~ll~~~v~-f~~LgLliiDEEqrFGV~~- 763 (1187)
T Consensus 92 k~~~~~-~~~~~GirV~~~TgD~~~~~-----~--~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 92 KYEEFS-RLEELGIRVGISTGDYDLDD-----E--RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHH-HHHHCCCEEEEECCCCCCCH-----H--HHCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCC
T ss_conf 999866-68865977999648865553-----3--414588799746786676506753334016899942101487565
Q ss_pred ---HH----HHHHCCCCCCEEEEECCCCCHHHHHH-HHCCCCC-CEEECCCCCCC--CEEEEEEEC---------CHHHH
Q ss_conf ---99----88631678848999535340889999-7122254-12201578877--537999857---------97898
Q gi|254780947|r 764 ---KE----ALKETHTGVHVLTLSATPIPRTLQLA-ITGVREL-SLISMPPINRI--ACRTSISIF---------DPLVV 823 (1187)
Q Consensus 764 ---Ke----~lk~~~~~vdvLtlsATPIPRTL~ms-l~g~rd~-S~i~tpP~~R~--~v~T~v~~~---------~~~~i 823 (1187)
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSAT-lpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSAT-LPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred CCEEHHHHHHHHHHCCCEEEEEEEEE-CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHH
T ss_conf 86402279888852755179887311-68889999985883555677886201577653179871476434542105799
Q ss_pred HHHHHHHHHHCCEEE-EEECCCCCHHHHH------------------------------------HHHHHHCCCCCEEEE
Q ss_conf 999998987188599-9826446928899------------------------------------999861654648886
Q gi|254780947|r 824 RETLMREYYRGGQSF-YVCPRLSDLEKCY------------------------------------TFLQSEVPELKIAMA 866 (1187)
Q Consensus 824 ~~ai~rEl~RgGQvf-~v~nrv~~i~~~~------------------------------------~~l~~l~p~~~i~va 866 (1187)
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~-~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~-GvafH 320 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAE-KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR-GVAFH 320 (766)
T ss_pred HHHHHHHHHCCCEEEEEEECCCHHH-HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCC
T ss_conf 9999999856986999974572599-999999998751277165430122344211235543221789999972-75411
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCC---------CCHHHHHHHHCCCCCCC--C
Q ss_conf 134674789999999963887579761020036332233266762502358---------86045532210356767--3
Q gi|254780947|r 867 HGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG---------LAQLYQLRGRVGRSKIA--S 935 (1187)
Q Consensus 867 HGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~G---------LaqlyQlrGRVGRs~~~--a 935 (1187)
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCC-CEEEEEEEEEEECCCCCEEECCHHHHHHCCCCCCCCCCCCCC
T ss_conf 2689788999999998669854999545776216886-328999103877577884777641486556767998757778
Q ss_pred EEEEEECCCCCCC
Q ss_conf 6999966888889
Q gi|254780947|r 936 FALFLLPENRPLT 948 (1187)
Q Consensus 936 yayl~~~~~~~l~ 948 (1187)
T Consensus 400 ~~~i~~~~~~~~~ 412 (766)
T COG1204 400 EAIILATSHDELE 412 (766)
T ss_pred CEEEEECCCCCHH
T ss_conf 2799935863155