HHsearch alignment for GI: 254780947 and conserved domain: COG4096
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=98.03 E-value=0.0015 Score=46.14 Aligned_cols=286 Identities=22% Similarity=0.281 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 744899999998760598854144316654324899999998751127--549998243665558999999860678983
Q gi|254780947|r 627 TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--LQVAVIAPTTLLVRQHFRLFSERFQGFSVR 704 (1187)
Q Consensus 627 T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~ 704 (1187)
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~r-aLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af-~~~~P~~~~ 244 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNR-ALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAF-EDFLPFGTK 244 (875)
T ss_pred HHHHHHHHHHHHHHHHCCCCE-EEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHH-HHHCCCCCC
T ss_conf 278899999999998668744-899970588852319999999996141430567612678999999999-963988640
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-----HHHCCCCCCCC-----CCEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 35410666302567777531225760898520-----65427852023-----656997222330088899886316788
Q gi|254780947|r 705 IASISRFVQTKEAALHKKSITEGQVDIVIGTH-----ALLNPKITFAN-----LGLIIIDEEQHFGVKHKEALKETHTGV 774 (1187)
Q Consensus 705 i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-----~ll~~~v~f~~-----LgLliiDEEqrFGV~~Ke~lk~~~~~v 774 (1187)
T Consensus 245 ~n~i~~------------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR-gi~~~~~--~I~dYF 309 (875)
T COG4096 245 MNKIED------------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR-GIYSEWS--SILDYF 309 (875)
T ss_pred EEEECC------------CCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHH-HHHHHHH--HHHHHH
T ss_conf 123201------------4678630588760377875640654565567888312899606666-6787667--898899
Q ss_pred CEE--EEECCCCC----HHHHHH----------HHCCCCCCEEECCCCCCCC----------------------------
Q ss_conf 489--99535340----889999----------7122254122015788775----------------------------
Q gi|254780947|r 775 HVL--TLSATPIP----RTLQLA----------ITGVRELSLISMPPINRIA---------------------------- 810 (1187)
Q Consensus 775 dvL--tlsATPIP----RTL~ms----------l~g~rd~S~i~tpP~~R~~---------------------------- 810 (1187)
T Consensus 310 dA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DG~Lvp-y~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd 388 (875)
T COG4096 310 DAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVP-YKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDD 388 (875)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHCCCCCC-CCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 99887612576211132310133797022412888852154578-86337664315667476755232333134368654
Q ss_pred --------EEEEEEECCHHHHHHHHHHHHHH--CC----EEEEEECCCCCHHHHHHHHHHHCCCCC---EEEEECCCCHH
Q ss_conf --------37999857978989999989871--88----599982644692889999986165464---88861346747
Q gi|254780947|r 811 --------CRTSISIFDPLVVRETLMREYYR--GG----QSFYVCPRLSDLEKCYTFLQSEVPELK---IAMAHGQMSPK 873 (1187)
Q Consensus 811 --------v~T~v~~~~~~~i~~ai~rEl~R--gG----Qvf~v~nrv~~i~~~~~~l~~l~p~~~---i~vaHGqm~~~ 873 (1187)
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~ 466 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--E 466 (875)
T ss_pred CCCCCCCCCHHEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCC--H
T ss_conf 46333553200003124789999999984256688866845899627078999999998748010674599984440--6
Q ss_pred HHHHHHHHHHCCCCCEEE--ECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 899999999638875797--610200363322332667625023588604553221035676
Q gi|254780947|r 874 NLEDKMNAFYEGQYDVLL--STSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKI 933 (1187)
Q Consensus 874 ~le~~m~~F~~~~~dvLv--~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~ 933 (1187)
T Consensus 467 ~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r-~V~SktkF~QMvGRGTRl~~ 527 (875)
T COG4096 467 QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDR-KVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred HHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCHHEEEEEEHH-HHHHHHHHHHHHCCCCCCCC
T ss_conf 56899998874378983587612454278762204564314-44668999998667654370