HHsearch alignment for GI: 254780947 and conserved domain: PRK00254
>PRK00254 ski2-like helicase; Provisional.
Probab=99.79 E-value=3.3e-15 Score=135.88 Aligned_cols=315 Identities=21% Similarity=0.257 Sum_probs=216.3
Q ss_pred CCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEEECHHHHH
Q ss_conf 784678989984888-88744899999998760598854144316654324899999998751-1275499982436655
Q gi|254780947|r 610 VSQDLYSQFIKRFPH-VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV-MNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 610 ~d~~~~~eFe~~Fpy-eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav-~~gkQvavlvPTTiLa 687 (1187)
T Consensus 8 ~~~~~~~~~-~~~gI~~l~p~Q~e~l~~---g~~~g~--NllvsaPT~sGKTlvAElail~~~l~~~~k~iyi~P~kALa 81 (717)
T PRK00254 8 VDERIKEIL-KERGIEELYPPQAEALTS---GVLEGK--NLLIAIPTASGKTLIAEIAMVNKLLREGGKAVYLVPLKALA 81 (717)
T ss_pred CCHHHHHHH-HHCCCCCCCHHHHHHHHH---HHCCCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 998999999-976987268999999874---233698--18998998874899999999999985299299992679999
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC----HHHHCCCCC-CCCCCEEEEECHHHHH--
Q ss_conf 589999998606789833541066630256777753122576089852----065427852-0236569972223300--
Q gi|254780947|r 688 RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT----HALLNPKIT-FANLGLIIIDEEQHFG-- 760 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT----H~ll~~~v~-f~~LgLliiDEEqrFG-- 760 (1187)
T Consensus 82 ~EK~~~f~~-~~~~g~~V~~~tGd~~~~~--~-----~l~~~dIiV~T~Ek~dsl~r~~~~~l~~i~lvViDEiH~igD~ 153 (717)
T PRK00254 82 EEKFREFKD-WEVLGLRVAMATGDYDSKD--E-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLLVADEIHLIGSR 153 (717)
T ss_pred HHHHHHHHH-HHHCCCEEEEEECCCCCCC--C-----CCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECEEECCCC
T ss_conf 999999987-7744988989748988870--1-----0468999998889999999716256532698999760788898
Q ss_pred ---HHHHHHHHHCCCCCCEEEEECC-CCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEC------CH-----HHHHH
Q ss_conf ---8889988631678848999535-340889999712225412201578877537999857------97-----89899
Q gi|254780947|r 761 ---VKHKEALKETHTGVHVLTLSAT-PIPRTLQLAITGVRELSLISMPPINRIACRTSISIF------DP-----LVVRE 825 (1187)
Q Consensus 761 ---V~~Ke~lk~~~~~vdvLtlsAT-PIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~------~~-----~~i~~ 825 (1187)
T Consensus 154 ~RG~~lE~~l~~l~~~~qiIgLSATi~N~~~la~WL-~a---~~~~~-~~RPVpL~~~v~~~~~~~~~~~~~~~~~~~~~ 228 (717)
T PRK00254 154 DRGATLEFILTHMLGRAQIIGLSATIGNPEELAEWL-NA---ELIVS-DWRPVKLRKGVFYQGFVFWEDGKIDRYNSWEE 228 (717)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHH-CC---CCCCC-CCCCCCEEEEEEECCEEEECCCCCHHHHHHHH
T ss_conf 740999999995100366999963349989999982-88---52156-88577527644206601104562054430789
Q ss_pred HHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCC-------------------------------CCCEEEEECCCCHHH
Q ss_conf 9998987188599982644692889999986165-------------------------------464888613467478
Q gi|254780947|r 826 TLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVP-------------------------------ELKIAMAHGQMSPKN 874 (1187)
Q Consensus 826 ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p-------------------------------~~~i~vaHGqm~~~~ 874 (1187)
T Consensus 229 l~~~~~~~~~~~LVF~~tR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~l~~GVafHHAGL~~~~ 308 (717)
T PRK00254 229 LVYDAVKRGKGALIFVNMRRKAEKTALELAKKIKNLLTKPELRELKELADSLEENPTNEKLAKALRGGVAFHHAGLGRDE 308 (717)
T ss_pred HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHCCCCCHHH
T ss_conf 99999974998189995579999999999998876307688999999999987376518999999708312158999889
Q ss_pred HHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECH---HH-----CCCCHHHHHHHHCCCC--CCCCEEEEEECCC
Q ss_conf 999999996388757976102003633223326676250---23-----5886045532210356--7673699996688
Q gi|254780947|r 875 LEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRA---DM-----FGLAQLYQLRGRVGRS--KIASFALFLLPEN 944 (1187)
Q Consensus 875 le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~a---d~-----~GLaqlyQlrGRVGRs--~~~ayayl~~~~~ 944 (1187)
T Consensus 309 R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr-~VIi~~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~D~~G~~iii~~~~ 387 (717)
T PRK00254 309 RVLVEDNFRKGLIKVVVATPTLSAGINTPAF-RVIIRDTWRYSEFGMERIPVLEIQQMMGRAGRPKYDEVGEAIIVSTTE 387 (717)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHCCCCCCCE-EEEEECCEEECCCCCEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 9999999987995899816446504577605-999926567079972378753688862506999878885089995485