HHsearch alignment for GI: 254780947 and conserved domain: PRK01172
>PRK01172 ski2-like helicase; Provisional.
Probab=99.86 E-value=1e-17 Score=155.34 Aligned_cols=379 Identities=20% Similarity=0.266 Sum_probs=261.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 78784678989984888887448999999987605988541443166543248999999987511275499982436655
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
T Consensus 6 ~~~~~~~~~~~~~-~g~~l~p~Q~ea~~~~~----~gk--NllvsaPTgsGKTlvAe~ai~~~l~~~~k~iyi~P~kAL~ 78 (674)
T PRK01172 6 LGYDDEFLNLFTG-NDFELYDHQRMAIEQLR----KGE--NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLA 78 (674)
T ss_pred CCCCHHHHHHHHH-CCCCCCHHHHHHHHHHH----CCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 2999799999996-79988989999999997----799--5999789998699999999999998589799987789999
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC----HHHHCCCCC-CCCCCEEEEECHHHHHHH
Q ss_conf 589999998606789833541066630256777753122576089852----065427852-023656997222330088
Q gi|254780947|r 688 RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT----HALLNPKIT-FANLGLIIIDEEQHFGVK 762 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT----H~ll~~~v~-f~~LgLliiDEEqrFGV~ 762 (1187)
T Consensus 79 ~EK~~~~~-~~~~~g~~v~~~tGd~~~~-----~~--~~~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~i~d~ 150 (674)
T PRK01172 79 MEKYEELS-RLRSLGMRVKISIGDYDDP-----PD--FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred HHHHHHHH-HHHCCCCEEEEEECCCCCC-----CC--CCCCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEECCCC
T ss_conf 99999999-8873798277885388898-----01--0255899998789999998649502213698998265250687
Q ss_pred HH--------HHHHHCCCCCCEEEEECC-CCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCH----------HHH
Q ss_conf 89--------988631678848999535-34088999971222541220157887753799985797----------898
Q gi|254780947|r 763 HK--------EALKETHTGVHVLTLSAT-PIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDP----------LVV 823 (1187)
Q Consensus 763 ~K--------e~lk~~~~~vdvLtlsAT-PIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~----------~~i 823 (1187)
T Consensus 151 ~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N~~~la~WL~----a~~~~~-~~RPVpL~~~v~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLN----ASLIKS-NFRPVPLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHC----CCEEEC-CCCCCCCEEEEEECCCCCCCCHHHCCCCH
T ss_conf 7249999999999853866079971578689999998838----855647-99986608988834601147043234539
Q ss_pred HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCC-----------------------CEEEEECCCCHHHHHHHHH
Q ss_conf 99999898718859998264469288999998616546-----------------------4888613467478999999
Q gi|254780947|r 824 RETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPEL-----------------------KIAMAHGQMSPKNLEDKMN 880 (1187)
Q Consensus 824 ~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~-----------------------~i~vaHGqm~~~~le~~m~ 880 (1187)
T Consensus 226 ~~l~~~~~~~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~lVE~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_conf 99999999669947999507588999999999853210100103154311209999999628283068999899999999
Q ss_pred HHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCC--------CCHHHHHHHHCCCCC--CCCEEEEEECCCCCCCHH
Q ss_conf 9963887579761020036332233266762502358--------860455322103567--673699996688888988
Q gi|254780947|r 881 AFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG--------LAQLYQLRGRVGRSK--IASFALFLLPENRPLTAA 950 (1187)
Q Consensus 881 ~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~G--------LaqlyQlrGRVGRs~--~~ayayl~~~~~~~l~~~ 950 (1187)
T Consensus 306 ~f~~g~i~vl~aT~TLAaGVNlPA-r~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~~~--~~ 382 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS--YD 382 (674)
T ss_pred HHHCCCCEEEEECCHHHHHCCCCE-EEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCEEEEECCCHH--HH
T ss_conf 998699649971446765447860-599993007817997157778989986135899999988708999728228--99
Q ss_pred HHHHH-HHHHH--HCCCCHHHHHHHHHHHHCCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999-99997--2556524899999985116300-------------04611155389833899999999999998288
Q gi|254780947|r 951 AQKRL-RILQS--LNTLGAGFQLASYDLDIRGTGN-------------LLGEEQSGHIREIGFELYQKMLEETVASIKGQ 1014 (1187)
Q Consensus 951 a~kRL-~ai~~--~~~lGsGf~iA~~DleiRGaG~-------------llG~~QsG~i~~vG~~ly~~ml~~av~~~kg~ 1014 (1187)
T Consensus 383 ~~~~~l~~~~e~i~S~L~~~~~l~~~iL~~Ia~g~~~s~~di~~f~~~Tf~~~q~------~~~~~~~~v~~~l~~L~~~ 456 (674)
T PRK01172 383 AAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQN------GVDEIDYYIESSLKFLKEN 456 (674)
T ss_pred HHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHEEC------CHHHHHHHHHHHHHHHHHC
T ss_conf 9999852898653430587046899999999816579999999999607041467------6789999999999999977
Q ss_pred C
Q ss_conf 8
Q gi|254780947|r 1015 K 1015 (1187)
Q Consensus 1015 ~ 1015 (1187)
T Consensus 457 g 457 (674)
T PRK01172 457 G 457 (674)
T ss_pred C
T ss_conf 8