HHsearch alignment for GI: 254780947 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.88 E-value=1e-17 Score=155.22 Aligned_cols=337 Identities=16% Similarity=0.184 Sum_probs=244.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC----------CC
Q ss_conf 56778784678989984888887448999999987605988541443166543248999999987511----------27
Q gi|254780947|r 605 VPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM----------NG 674 (1187)
Q Consensus 605 g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~----------~g 674 (1187)
T Consensus 86 F~dl~L~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~G------kDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~ 159 (472)
T PRK01297 86 FHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAG------HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 159 (472)
T ss_pred HHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCC
T ss_conf 864788999999999779999999999999999769------98899899986799999999999997177510113689
Q ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-HH----HCCCCCCCCCC
Q ss_conf 54999824366555899999986067898335410666302567777531225760898520-65----42785202365
Q gi|254780947|r 675 LQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-AL----LNPKITFANLG 749 (1187)
Q Consensus 675 kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~l----l~~~v~f~~Lg 749 (1187)
T Consensus 160 p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~---~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~ 236 (472)
T PRK01297 160 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGM---DFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 236 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCE
T ss_conf 52999879999999999999997462797699997898---879999998558998899797999987434825425522
Q ss_pred EEEEECHHH-----HHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCC--EEEEEEECCH
Q ss_conf 699722233-----00888998863167--88489995353408899997122254122015788775--3799985797
Q gi|254780947|r 750 LIIIDEEQH-----FGVKHKEALKETHT--GVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIA--CRTSISIFDP 820 (1187)
Q Consensus 750 LliiDEEqr-----FGV~~Ke~lk~~~~--~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~--v~T~v~~~~~ 820 (1187)
T Consensus 237 ~lVlDEAD~LLd~gf~~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~~~~~~p~~v~i~~~~~~~~~v~q~~~~~~~ 316 (472)
T PRK01297 237 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 316 (472)
T ss_pred EEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCH
T ss_conf 99998731210257599999999968985571699985257789999999977998899965776677760289998188
Q ss_pred HHHHHHHHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEE
Q ss_conf 898999998987---18859998264469288999998616546488861346747899999999638875797610200
Q gi|254780947|r 821 LVVRETLMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVE 897 (1187)
Q Consensus 821 ~~i~~ai~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiE 897 (1187)
T Consensus 317 ~d-k~~~L~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~~~--g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaa 393 (472)
T PRK01297 317 SD-KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAG 393 (472)
T ss_pred HH-HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf 89-9999999998479873689617499999999876544--96168643778999999999999769996998866133
Q ss_pred CCCCCCCCCEEEEECHHHCCCCHHHHH-HHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 363322332667625023588604553-2210356767369999668888898899999999972
Q gi|254780947|r 898 SGLDLPKANTMIVQRADMFGLAQLYQL-RGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 898 sGlDip~aNTiii~~ad~~GLaqlyQl-rGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
T Consensus 394 RGLDi~~V~~VInyD~P~~--~~~YIHRiGRTGRaG~~G~aisfv~~~------d~~~~~~ie~~ 450 (472)
T PRK01297 394 RGIHIDGISHVINFTLPED--PDDYVHRIGRTGRAGASGVSISFAGED------DAFQLPEIEEL 450 (472)
T ss_pred CCCCCCCCCEEEEECCCCC--HHHHHHCCCHHHCCCCCEEEEEEECHH------HHHHHHHHHHH
T ss_conf 6677578888999689897--676010265312689963799986388------99999999999