HHsearch alignment for GI: 254780947 and conserved domain: PRK01297

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=94.89  E-value=0.15  Score=30.60  Aligned_cols=89  Identities=11%  Similarity=0.106  Sum_probs=46.5

Q ss_pred             CCEEEECCCCCCHHHHHH--HHHHH---C--------CCC-EEEEECCHHHHHHHHHHHHHHCCCC--EEEECCCCCCCC
Q ss_conf             860898037652279999--99986---2--------998-9999299899999999999857998--099857224670
Q gi|254780947|r   15 CKKITLSPVIDGTEGFIL--AEIAR---L--------GLS-LVYICSDERILINLKKILTLVVPDI--RVIIFPAWDCLP   78 (1187)
Q Consensus        15 ~~~i~l~Gl~gs~~alll--a~l~~---~--------~rp-ilvI~~d~~~A~~l~~dL~~f~~~~--~V~~FP~~E~LP   78 (1187)
T Consensus       121 GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~-------  193 (472)
T PRK01297        121 GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTF-------  193 (472)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE-------
T ss_conf             9988998999867999999999999971775101136895299987999999999999999746279769999-------


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf             10048998999999999999841244688769995667852369
Q gi|254780947|r   79 YDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS  122 (1187)
Q Consensus        79 Yd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl  122 (1187)
T Consensus       194 ~GG~----~~~-~q~~---~l~----~~~~dIvVaTPGRL~~l~  225 (472)
T PRK01297        194 VGGM----DFD-KQLK---QLE----ARFCDILVATPGRLLDFN  225 (472)
T ss_pred             ECCC----CHH-HHHH---HHH----CCCCCEEEECHHHHHHHH
T ss_conf             7898----879-9999---985----589988997979999874