HHsearch alignment for GI: 254780947 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.83 E-value=0.064 Score=33.52 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=66.5
Q ss_pred CCCEEEECCCCCCHHHHHHH--HHHHC-----------C-CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
Q ss_conf 88608980376522799999--99862-----------9-9899992998999999999998579980998572246701
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILA--EIARL-----------G-LSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPY 79 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla--~l~~~-----------~-rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPY 79 (1187)
T Consensus 45 ~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~~~~lr~-----~~l~ 119 (574)
T PRK04537 45 PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRF-----ALVY 119 (574)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEE-----EEEE
T ss_conf 79988998489888999999999999983744345778996199977989999999999999864589779-----9997
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 00489989999999999998412446887699956678523699866885154899409741999999999982884
Q gi|254780947|r 80 DRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQ 156 (1187)
Q Consensus 80 d~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~ 156 (1187)
T Consensus 120 GG~~----~~-~q~~~L--------~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD------~LLd~gF~ 177 (574)
T PRK04537 120 GGVD----YD-KQRELL--------QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD------RMFDLGFI 177 (574)
T ss_pred CCCC----HH-HHHHHH--------CCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCH------HHHCCCCH
T ss_conf 9966----88-999987--------35999899898999999981798653331589962732------65428779