HHsearch alignment for GI: 254780947 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.83  E-value=0.064  Score=33.52  Aligned_cols=119  Identities=12%  Similarity=0.112  Sum_probs=66.5

Q ss_pred             CCCEEEECCCCCCHHHHHHH--HHHHC-----------C-CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
Q ss_conf             88608980376522799999--99862-----------9-9899992998999999999998579980998572246701
Q gi|254780947|r   14 YCKKITLSPVIDGTEGFILA--EIARL-----------G-LSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPY   79 (1187)
Q Consensus        14 ~~~~i~l~Gl~gs~~allla--~l~~~-----------~-rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPY   79 (1187)
T Consensus        45 ~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~~~~lr~-----~~l~  119 (574)
T PRK04537         45 PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRF-----ALVY  119 (574)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEE-----EEEE
T ss_conf             79988998489888999999999999983744345778996199977989999999999999864589779-----9997


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf             00489989999999999998412446887699956678523699866885154899409741999999999982884
Q gi|254780947|r   80 DRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQ  156 (1187)
Q Consensus        80 d~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~  156 (1187)
T Consensus       120 GG~~----~~-~q~~~L--------~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD------~LLd~gF~  177 (574)
T PRK04537        120 GGVD----YD-KQRELL--------QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD------RMFDLGFI  177 (574)
T ss_pred             CCCC----HH-HHHHHH--------CCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCH------HHHCCCCH
T ss_conf             9966----88-999987--------35999899898999999981798653331589962732------65428779