HHsearch alignment for GI: 254780947 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.89 E-value=2.2e-18 Score=160.43 Aligned_cols=336 Identities=18% Similarity=0.208 Sum_probs=244.4
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC----------CCCE
Q ss_conf 778784678989984888887448999999987605988541443166543248999999987511----------2754
Q gi|254780947|r 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM----------NGLQ 676 (1187)
Q Consensus 607 ~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~----------~gkQ 676 (1187)
T Consensus 13 ~lgL~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G------~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~ 86 (423)
T PRK04837 13 DFALHPKVVEALEKKGFEYCTPIQALALPLTLAG------RDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPR 86 (423)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 4796999999999779999999999999999679------9889989998749999999999999837453345567861
Q ss_pred EEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-HH----CCCCCCCCCCEE
Q ss_conf 9998243665558999999860678983354106663025677775312257608985206-54----278520236569
Q gi|254780947|r 677 VAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-LL----NPKITFANLGLI 751 (1187)
Q Consensus 677 vavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-ll----~~~v~f~~LgLl 751 (1187)
T Consensus 87 aLIL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~~l~---~-~~dIlV~TPgRL~d~~~~~~~~l~~i~~l 162 (423)
T PRK04837 87 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLKVLE---S-GVDILIGTTGRLIDYAKQNHINLGAIQVV 162 (423)
T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH---C-CCCEEEECHHHHHHHHHHCCCCCCCCEEE
T ss_conf 8999388999999999999974325845999989988799999871---7-99989989189999986422123664289
Q ss_pred EEECHHH-----HHHHHHHHHHHCCCCCCEE--EEECCCCCHHHHHHHHCCCCCCEEECCCCCCCC--EEE-EEEECCHH
Q ss_conf 9722233-----0088899886316788489--995353408899997122254122015788775--379-99857978
Q gi|254780947|r 752 IIDEEQH-----FGVKHKEALKETHTGVHVL--TLSATPIPRTLQLAITGVRELSLISMPPINRIA--CRT-SISIFDPL 821 (1187)
Q Consensus 752 iiDEEqr-----FGV~~Ke~lk~~~~~vdvL--tlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~--v~T-~v~~~~~~ 821 (1187)
T Consensus 163 VlDEAD~lld~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~~~~~ 242 (423)
T PRK04837 163 VLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEE 242 (423)
T ss_pred EEECHHHHHHCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHH
T ss_conf 96344654302639999999996896221089997036888999999997789879996577656654269999917277
Q ss_pred --HHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECC
Q ss_conf --989999989871885999826446928899999861654648886134674789999999963887579761020036
Q gi|254780947|r 822 --VVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESG 899 (1187)
Q Consensus 822 --~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsG 899 (1187)
T Consensus 243 K~~~L~~ll~~-~~~~k~iIF~nt~~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 319 (423)
T PRK04837 243 KMRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVAARG 319 (423)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCC
T ss_conf 99999999984-08874688616288899999999765--9817872254579999999999976999899870043277
Q ss_pred CCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 33223326676250235886045532-21035676736999966888889889999999997255
Q gi|254780947|r 900 LDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 900 lDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
T Consensus 320 LDi~~V~~VInyD~P~--~~~~YiHRiGRTgRaG~~G~aitf~------~~~~~~~l~~ie~~~~ 376 (423)
T PRK04837 320 LHIPDVTHVFNYDLPD--DCEDYVHRIGRTGRAGASGHSISFA------CEEYALNLPAIETYIG 376 (423)
T ss_pred CCCCCCCEEEEECCCC--CHHHEECCCCHHHCCCCCEEEEEEE------CHHHHHHHHHHHHHHC
T ss_conf 7726798899969989--7455100465412789946899987------3999999999999968