HHsearch alignment for GI: 254780947 and conserved domain: PRK04837

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.20  E-value=0.11  Score=31.83  Aligned_cols=91  Identities=9%  Similarity=0.122  Sum_probs=55.0

Q ss_pred             CCCEEEECCCCCCHHHHHH--HHHHH-------CC----C-CEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
Q ss_conf             8860898037652279999--99986-------29----9-899992998999999999998579980998572246701
Q gi|254780947|r   14 YCKKITLSPVIDGTEGFIL--AEIAR-------LG----L-SLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPY   79 (1187)
Q Consensus        14 ~~~~i~l~Gl~gs~~alll--a~l~~-------~~----r-pilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPY   79 (1187)
T Consensus        45 ~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~~~l~~-----~~~~  119 (423)
T PRK04837         45 AGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKL-----GLAY  119 (423)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEE-----EEEE
T ss_conf             79988998999874999999999999983745334556786189993889999999999999743258459-----9998


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf             0048998999999999999841244688769995667852369
Q gi|254780947|r   80 DRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS  122 (1187)
Q Consensus        80 d~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl  122 (1187)
T Consensus       120 GG~~~-----~~q~~~---l-----~~~~dIlV~TPgRL~d~~  149 (423)
T PRK04837        120 GGEGY-----DKQLKV---L-----ESGVDILIGTTGRLIDYA  149 (423)
T ss_pred             CCCCH-----HHHHHH---H-----HCCCCEEEECHHHHHHHH
T ss_conf             99887-----999998---7-----179998998918999998