HHsearch alignment for GI: 254780947 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.20 E-value=0.11 Score=31.83 Aligned_cols=91 Identities=9% Similarity=0.122 Sum_probs=55.0
Q ss_pred CCCEEEECCCCCCHHHHHH--HHHHH-------CC----C-CEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
Q ss_conf 8860898037652279999--99986-------29----9-899992998999999999998579980998572246701
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFIL--AEIAR-------LG----L-SLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPY 79 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~alll--a~l~~-------~~----r-pilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPY 79 (1187)
T Consensus 45 ~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~~~l~~-----~~~~ 119 (423)
T PRK04837 45 AGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKL-----GLAY 119 (423)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEE-----EEEE
T ss_conf 79988998999874999999999999983745334556786189993889999999999999743258459-----9998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf 0048998999999999999841244688769995667852369
Q gi|254780947|r 80 DRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS 122 (1187)
Q Consensus 80 d~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl 122 (1187)
T Consensus 120 GG~~~-----~~q~~~---l-----~~~~dIlV~TPgRL~d~~ 149 (423)
T PRK04837 120 GGEGY-----DKQLKV---L-----ESGVDILIGTTGRLIDYA 149 (423)
T ss_pred CCCCH-----HHHHHH---H-----HCCCCEEEECHHHHHHHH
T ss_conf 99887-----999998---7-----179998998918999998