HHsearch alignment for GI: 254780947 and conserved domain: PRK04914
>PRK04914 ATP-dependent helicase HepA; Validated.
Probab=99.24 E-value=4.7e-08 Score=80.82 Aligned_cols=218 Identities=20% Similarity=0.207 Sum_probs=119.5
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCC--CCEEEECCCEECCCCCCCCCEEEE
Q ss_conf 188599982644692889999986165464888613467478999999996388--757976102003633223326676
Q gi|254780947|r 833 RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQ--YDVLLSTSIVESGLDLPKANTMIV 910 (1187)
Q Consensus 833 RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~--~dvLv~TtIiEsGlDip~aNTiii 910 (1187)
T Consensus 492 ~~eKvLVFte~~~Ta~~L~~~Lr~~-~Gi~~avfh~gms~~ERdraaa~Fa~~e~gaqVLI~TEagsEG~NLQF~~~LVn 570 (955)
T PRK04914 492 RSEKVLVICAKAETALQLEQALRER-EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL 570 (955)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHEE
T ss_conf 7985899968389999999999875-599569970999989999999986176778519997252124503777435235
Q ss_pred ECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHH-----HHHHHCC-CCHHHHHHHHHHHHCCCCCCC
Q ss_conf 2502358860455322103567673699996688888988999999-----9997255-652489999998511630004
Q gi|254780947|r 911 QRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLR-----ILQSLNT-LGAGFQLASYDLDIRGTGNLL 984 (1187)
Q Consensus 911 ~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~-----ai~~~~~-lGsGf~iA~~DleiRGaG~ll 984 (1187)
T Consensus 571 yDL-PWNP~rLEQRIGRlDRiGQ~~dV~Ihvpy---~~~s~q~~l~~wy~~gl~af~~~~~~g~~v~~~-~~~~l~-~~l 644 (955)
T PRK04914 571 FDL-PFNPDLLEQRIGRLDRIGQKHDIQIHVPY---LEGTAQERLFRWYHEGLNAFEHTCPTGRALYDE-FGDELI-PYL 644 (955)
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCCEEEEEEE---CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHH-HHH
T ss_conf 258-98765889985206542786750798620---289889999999998888975569118999999-999999-998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 61115538983389999999999999828887676666525654885116734389988899999987508998999999
Q gi|254780947|r 985 GEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHF 1064 (1187)
Q Consensus 985 G~~QsG~i~~vG~~ly~~ml~~av~~~kg~~~~~~~~~~~~i~~~~~~~ip~~yi~d~~~rl~~Y~ri~~~~~~~~~~~~ 1064 (1187)
T Consensus 645 ~~~-----~~~~~~~li~~~~~~~~~l~~~l---e~Grd~--LLe~ns~~~~-----~a~--~l~~~i~~~d~~~~l~~~ 707 (955)
T PRK04914 645 ASP-----DTDGLDDLIAETREQHEALKAQL---EQGRDR--LLELNSCGGE-----KAQ--ALAEAIAEQDDDTNLPNF 707 (955)
T ss_pred HCC-----CHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHCCCHH-----HHH--HHHHHHHHHCCCHHHHHH
T ss_conf 477-----85789999999999999999999---844577--7776268817-----799--999999863150569999
Q ss_pred HHHHHHHCCC
Q ss_conf 9997762488
Q gi|254780947|r 1065 KEEMVDRFGP 1074 (1187)
Q Consensus 1065 ~~el~drfG~ 1074 (1187)
T Consensus 708 ~~~~~d~~gv 717 (955)
T PRK04914 708 ALNLFDIIGI 717 (955)
T ss_pred HHHHHHHHCC
T ss_conf 9999998295