HHsearch alignment for GI: 254780947 and conserved domain: PRK05298
>PRK05298 excinuclease ABC subunit B; Provisional.
Probab=100.00 E-value=0 Score=427.42 Aligned_cols=456 Identities=18% Similarity=0.271 Sum_probs=362.3
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC-----------
Q ss_conf 778876514886089803765227999999-98629989999299899999999999857998099857-----------
Q gi|254780947|r 5 SDIERISEKYCKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP----------- 72 (1187)
Q Consensus 5 ~~~~~~~~k~~~~i~l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP----------- 72 (1187)
T Consensus 24 ~L~~gi-~~g~~~Q~LlGvTGSGKTfTmAnvI~~~~rPtLVlahNKTLAAQLy~Efk~fFP~NaVEYFVSYyDYYQPEAY 102 (657)
T PRK05298 24 ELVEGI-ESGEKHQTLLGVTGSGKTFTMANVIARVQRPTLVLAHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAY 102 (657)
T ss_pred HHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 999899-7499636997036785668999999986897599766588999999999976888717998514456697111
Q ss_pred --CCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf --224670100489989999999999998412446887699956678523699866885154899409741999999999
Q gi|254780947|r 73 --AWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKL 150 (1187)
Q Consensus 73 --~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~L 150 (1187)
T Consensus 103 ip~tDtYIEKdssIN~eId~lR~sAT~SLl~----RrDVIVVASVSCIY-GLGsPe~Y~~~~l~l~~G~~i~r~~ll~~L 177 (657)
T PRK05298 103 VPSSDTYIEKDSSINEEIERLRLSATKSLLE----RRDVIVVASVSCIY-GLGSPEEYLKMVLHLRVGQEIDRRELLRRL 177 (657)
T ss_pred CCCCCCEEECCCHHHHHHHHHHHHHHHHHHC----CCCEEEEEEHHHCC-CCCCHHHHHHCEEEEECCCEECHHHHHHHH
T ss_conf 4788852423634669999999999998854----79869997367616-899979997343777589771799999999
Q ss_pred HHCCCEECCCCCCCCEEEEECCEEEEECCC-CCCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHHH
Q ss_conf 982884554521783165457475730698-8872688634872210154513748531222169994377321799999
Q gi|254780947|r 151 ETNGFQRVNAVYKVGEYAVRGGILDVYEPT-KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNI 229 (1187)
Q Consensus 151 v~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~-~~~PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~i 229 (1187)
T Consensus 178 V~~qY~RnD~~~~RG~FRVrGDvVdI~Pa~~ed~aiRIeffgDeIE~I~~~Dpltg~~i~~~~~~~IfPAshyVt~~e~l 257 (657)
T PRK05298 178 VELQYERNDIDFQRGTFRVRGDVIDIFPAEYEDRAIRIEFFGDEIERISEFDPLTGEVLGELDRVTIYPASHYVTPRERL 257 (657)
T ss_pred HHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHH
T ss_conf 98287767651168555773664788337777616999995780628999827788352433349981786768997999
Q ss_pred HHHHHHHHHHCCCCHH-----------------HCHHHHHHHCCCCCCCHHHHHHHHH-----CCCCCCCCCCCCCCEEC
Q ss_conf 9999999974173700-----------------1577789977898788777677761-----48767673346761334
Q gi|254780947|r 230 SRFRENYLANFGTTTQ-----------------EDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFPYLSEFCIIT 287 (1187)
Q Consensus 230 ~~fr~~~r~~f~~~~~-----------------~~~i~e~Is~g~~~~GiE~yLPlFy-----e~~~tLfDYLp~~~iii 287 (1187)
T Consensus 258 ~~Ai~~I~~EL~eRl~~f~~~gKllEAqRL~qRT~yDlEMl~E~GyCsGIENYSRhl~gR~pGe~P~tLlDYfp~DfLl~ 337 (657)
T PRK05298 258 ERAIESIKEELEERLKELEKEGKLLEAQRLEQRTRYDLEMLRELGYCSGIENYSRHLSGRAPGEPPPTLLDYFPDDFLLF 337 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 99999999999999999997677798889999988799999982877560121565069998878944887577565999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCCCCC--CCCCCEEE
Q ss_conf 6535899998899999998999998652220265567850211699899999751146089626753222--24673377
Q gi|254780947|r 288 DPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQE--TAHNRVVH 365 (1187)
Q Consensus 288 ~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~~~~--~~~~~~~~ 365 (1187)
T Consensus 338 iDESHvtvPQ----i~gMy~GDrsRK~~LVe~GFRLPSAlDNRPL~feEFe~~~~---q~iyVSATPg~yEl~~s~~vvE 410 (657)
T PRK05298 338 IDESHVTVPQ----IGGMYNGDRSRKETLVEYGFRLPSALDNRPLKFEEFEAKVP---QTIYVSATPGDYELEKSGQVVE 410 (657)
T ss_pred ECCCCCCCHH----HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC---CEEEEECCCCHHHHHHCCCEEE
T ss_conf 8321124087----88786231577888987057787233489978899997448---7799956985898873667345
Q ss_pred EEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHH--
Q ss_conf 641466566820010011222200018589999999999867982999958945899999867764887332345224--
Q gi|254780947|r 366 LNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLT-- 443 (1187)
Q Consensus 366 l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~-- 443 (1187)
T Consensus 411 QiIRPTGLlDP~-------ievrp~~~Qiddl~~ei~~~~~~~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~t~ 483 (657)
T PRK05298 411 QIIRPTGLLDPE-------IEVRPTKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTL 483 (657)
T ss_pred EEECCCCCCCCC-------EEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 777788787984-------5996487879999999999963697699995459899999999996798079962666188
Q ss_pred ----HHHCCCCCCEEEEEC--CCCCCCCCCC--EEEEECCCCCCC
Q ss_conf ----552046684799981--0446874665--688712001373
Q gi|254780947|r 444 ----EINSLLKEEIAAVIL--PINQGFETKH--MILVTETDLLGK 480 (1187)
Q Consensus 444 ----~~~~~~~~~i~i~~~--~L~~GF~~~k--l~vITE~EIFG~ 480 (1187)
T Consensus 484 eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILDADKeGF 528 (657)
T PRK05298 484 ERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGF 528 (657)
T ss_pred HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEECCCCCC
T ss_conf 999999998588875897500220457876135798870685221