HHsearch alignment for GI: 254780947 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=99.91 E-value=9e-20 Score=171.10 Aligned_cols=336 Identities=21% Similarity=0.214 Sum_probs=252.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC---------CCEEE
Q ss_conf 787846789899848888874489999999876059885414431665432489999999875112---------75499
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN---------GLQVA 678 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~---------gkQva 678 (1187)
T Consensus 6 lgL~~~ll~aL~~~G~~~PTpIQ~~aIP~iL~G------rDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aL 79 (457)
T PRK10590 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEG------RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (457)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 498999999999779999999999999999779------98899889811899999999999986367654456882499
Q ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-H----HHCCCCCCCCCCEEEE
Q ss_conf 9824366555899999986067898335410666302567777531225760898520-6----5427852023656997
Q gi|254780947|r 679 VIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-A----LLNPKITFANLGLIII 753 (1187)
Q Consensus 679 vlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~----ll~~~v~f~~LgLlii 753 (1187)
T Consensus 80 IL~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q~~~l---~-~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVl 155 (457)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL---R-GGVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (457)
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH---C-CCCCEEEECCHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 9768799999999999974255894599997997775999986---1-89998998928889888626776575239998
Q ss_pred ECHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCC--CEEEEEEECCHHHHHHH
Q ss_conf 22233-----008889988631678848999535340889999712225412201578877--53799985797898999
Q gi|254780947|r 754 DEEQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRI--ACRTSISIFDPLVVRET 826 (1187)
Q Consensus 754 DEEqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~--~v~T~v~~~~~~~i~~a 826 (1187)
T Consensus 156 DEAD~mLd~gF~~di~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~v~~~~k~~~ 235 (457)
T PRK10590 156 DEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKREL 235 (457)
T ss_pred ECCHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHH
T ss_conf 37056515665366899986387652689995048889999999976898899963676656130489999566789999
Q ss_pred HHHHHHHC--CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCC
Q ss_conf 99898718--8599982644692889999986165464888613467478999999996388757976102003633223
Q gi|254780947|r 827 LMREYYRG--GQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPK 904 (1187)
Q Consensus 827 i~rEl~Rg--GQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~ 904 (1187)
T Consensus 236 L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~--g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 313 (457)
T PRK10590 236 LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE 313 (457)
T ss_pred HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHC--CCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 999986158663358841199999999998556--998232324789999999999998699829995770115566356
Q ss_pred CCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 326676250235886045532-21035676736999966888889889999999997255
Q gi|254780947|r 905 ANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 905 aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
T Consensus 314 V~~VInyD~P~~--~e~YvHRiGRTGRaG~~G~ait~v~~------~e~~~~~~ie~~~~ 365 (457)
T PRK10590 314 LPHVVNYELPNV--PEDYVHRIGRTGRAAATGEALSLVCV------DEHKLLRDIEKLLK 365 (457)
T ss_pred CCEEEEECCCCC--HHHEECCCCCCCCCCCCEEEEEEECH------HHHHHHHHHHHHHC
T ss_conf 887999389997--44500226706058995369998668------99999999999977