HHsearch alignment for GI: 254780947 and conserved domain: PRK10590

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=99.91  E-value=9e-20  Score=171.10  Aligned_cols=336  Identities=21%  Similarity=0.214  Sum_probs=252.3

Q ss_pred             CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC---------CCEEE
Q ss_conf             787846789899848888874489999999876059885414431665432489999999875112---------75499
Q gi|254780947|r  608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN---------GLQVA  678 (1187)
Q Consensus       608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~---------gkQva  678 (1187)
T Consensus         6 lgL~~~ll~aL~~~G~~~PTpIQ~~aIP~iL~G------rDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aL   79 (457)
T PRK10590          6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEG------RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL   79 (457)
T ss_pred             CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             498999999999779999999999999999779------98899889811899999999999986367654456882499


Q ss_pred             EEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-H----HHCCCCCCCCCCEEEE
Q ss_conf             9824366555899999986067898335410666302567777531225760898520-6----5427852023656997
Q gi|254780947|r  679 VIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-A----LLNPKITFANLGLIII  753 (1187)
Q Consensus       679 vlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~----ll~~~v~f~~LgLlii  753 (1187)
T Consensus        80 IL~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q~~~l---~-~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVl  155 (457)
T PRK10590         80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL---R-GGVDVLVATPGRLLDLEHQNAVKLDQVEILVL  155 (457)
T ss_pred             EECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH---C-CCCCEEEECCHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             9768799999999999974255894599997997775999986---1-89998998928889888626776575239998


Q ss_pred             ECHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCC--CEEEEEEECCHHHHHHH
Q ss_conf             22233-----008889988631678848999535340889999712225412201578877--53799985797898999
Q gi|254780947|r  754 DEEQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRI--ACRTSISIFDPLVVRET  826 (1187)
Q Consensus       754 DEEqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~--~v~T~v~~~~~~~i~~a  826 (1187)
T Consensus       156 DEAD~mLd~gF~~di~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~v~~~~k~~~  235 (457)
T PRK10590        156 DEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKREL  235 (457)
T ss_pred             ECCHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHH
T ss_conf             37056515665366899986387652689995048889999999976898899963676656130489999566789999


Q ss_pred             HHHHHHHC--CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCC
Q ss_conf             99898718--8599982644692889999986165464888613467478999999996388757976102003633223
Q gi|254780947|r  827 LMREYYRG--GQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPK  904 (1187)
Q Consensus       827 i~rEl~Rg--GQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~  904 (1187)
T Consensus       236 L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~--g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~  313 (457)
T PRK10590        236 LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE  313 (457)
T ss_pred             HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHC--CCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf             999986158663358841199999999998556--998232324789999999999998699829995770115566356


Q ss_pred             CCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             326676250235886045532-21035676736999966888889889999999997255
Q gi|254780947|r  905 ANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT  963 (1187)
Q Consensus       905 aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~  963 (1187)
T Consensus       314 V~~VInyD~P~~--~e~YvHRiGRTGRaG~~G~ait~v~~------~e~~~~~~ie~~~~  365 (457)
T PRK10590        314 LPHVVNYELPNV--PEDYVHRIGRTGRAAATGEALSLVCV------DEHKLLRDIEKLLK  365 (457)
T ss_pred             CCEEEEECCCCC--HHHEECCCCCCCCCCCCEEEEEEECH------HHHHHHHHHHHHHC
T ss_conf             887999389997--44500226706058995369998668------99999999999977