HHsearch alignment for GI: 254780947 and conserved domain: PRK11057
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional.
Probab=99.84 E-value=9.5e-17 Score=147.79 Aligned_cols=314 Identities=18% Similarity=0.218 Sum_probs=236.8
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 467898998488888-7448999999987605988541443166543248999999987511275499982436655589
Q gi|254780947|r 612 QDLYSQFIKRFPHVE-TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQH 690 (1187)
Q Consensus 612 ~~~~~eFe~~FpyeE-T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH 690 (1187)
T Consensus 11 ~~a~~~L~~~FG~~~Fr~~Q~e~i~~~l~----g~--D~l~~mpTG~GKSlcyQlPa---l~~~g~tiVisPLisLm~DQ 81 (607)
T PRK11057 11 SGAKQVLQETFGYQQFRPGQEEIIDTVLS----GR--DCLVVMPTGGGKSLCYQIPA---LVLDGLTLVVSPLISLMKDQ 81 (607)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHC----CC--CEEEECCCCCHHHHHHHHHH---HHCCCCEEEECCHHHHHHHH
T ss_conf 79999999866984345769999999986----99--88998789955979999999---87799889986879999999
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-HHHCCC----CCCCCCCEEEEECHHH-------
Q ss_conf 9999986067898335410666302567777531225760898520-654278----5202365699722233-------
Q gi|254780947|r 691 FRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-ALLNPK----ITFANLGLIIIDEEQH------- 758 (1187)
Q Consensus 691 ~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~ll~~~----v~f~~LgLliiDEEqr------- 758 (1187)
T Consensus 82 v~~L~~----~gi~a~~l~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHcvs~WGhd 157 (607)
T PRK11057 82 VDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCC
T ss_conf 999997----8992999569999999999999997599879998855856978999997188664885306667541550
Q ss_pred HHHH--HHHHHHHCCCCCCEEEEECCCCCHHHH--HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHH--HHHHHHHHHH
Q ss_conf 0088--899886316788489995353408899--997122254122015788775379998579789--8999998987
Q gi|254780947|r 759 FGVK--HKEALKETHTGVHVLTLSATPIPRTLQ--LAITGVRELSLISMPPINRIACRTSISIFDPLV--VRETLMREYY 832 (1187)
Q Consensus 759 FGV~--~Ke~lk~~~~~vdvLtlsATPIPRTL~--msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~--i~~ai~rEl~ 832 (1187)
T Consensus 158 FRp~Y~~l~~l~~~~~~~p~~AlTATAt~~v~~di~~~L~l~~~~~~~~-~f~RpNl~~~v~~~~~~~~~~~~~~~~~~~ 236 (607)
T PRK11057 158 FRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFDRPNIRYMLMEKFKPLDQLMRYVQEQRG 236 (607)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEC-CCCCCCCEEEEEECCCHHHHHHHHHHHCCC
T ss_conf 0388999999999769997489996368789999999708999807825-778887414555447739999999870689
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEEC
Q ss_conf 18859998264469288999998616546488861346747899999999638875797610200363322332667625
Q gi|254780947|r 833 RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQR 912 (1187)
Q Consensus 833 RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ 912 (1187)
T Consensus 237 ~sgI--IYc~trk~~e~la~~L~~~--G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk~dVR~ViH~~ 312 (607)
T PRK11057 237 KSGI--IYCNSRAKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCEE--EEECCHHHHHHHHHHHHHC--CCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEECC
T ss_conf 9779--9969289999999999857--97545305899978999999987568875899750110576777766799778
Q ss_pred HHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 02358860455322103567673699996688
Q gi|254780947|r 913 ADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 913 ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
T Consensus 313 ~-P~s~e~yyQE~GRAGRDG~~a~c~l~y~~~ 343 (607)
T PRK11057 313 I-PRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (607)
T ss_pred C-CCCHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf 9-999999999886352589854189985687