HHsearch alignment for GI: 254780947 and conserved domain: PRK11448

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=98.91  E-value=1.8e-06  Score=68.69  Aligned_cols=290  Identities=20%  Similarity=0.289  Sum_probs=177.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf             8888744899999998760598854144316654324899999998751127--54999824366555899999986067
Q gi|254780947|r  623 PHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--LQVAVIAPTTLLVRQHFRLFSERFQG  700 (1187)
Q Consensus       623 pyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--kQvavlvPTTiLa~QH~~tf~~Rf~~  700 (1187)
T Consensus       414 ~i~lR~YQ~~AI~~v~~a~~~~~r-raLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~-~~-  490 (1126)
T PRK11448        414 ELGLRYYQEDAIQAVEKALANGQR-EILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKD-TK-  490 (1126)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-CC-
T ss_conf             777868899999999999980985-468872488858989999999999658767257985658999999998754-34-


Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-----HHCCC------CCCCCCCEEEEECHHHH----------
Q ss_conf             8983354106663025677775312257608985206-----54278------52023656997222330----------
Q gi|254780947|r  701 FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-----LLNPK------ITFANLGLIIIDEEQHF----------  759 (1187)
Q Consensus       701 ~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-----ll~~~------v~f~~LgLliiDEEqrF----------  759 (1187)
T Consensus       491 ----~~~~~~~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~--FDlIIiDEaHRgy~ld~em~e~  564 (1126)
T PRK11448        491 ----IEGNQTFASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQ--YDCIVVDEAHRGYTLDKEMTEG  564 (1126)
T ss_pred             ----CCCCCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCC--CCEEEEECCCCCCCCCCCCCCC
T ss_conf             ----5456664002200102567878777199973078998752357677999985--1379897787887433231100


Q ss_pred             --H--------HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHC-----------CCCCCEEEC-CCCCCCCEEEEEE-
Q ss_conf             --0--------8889988631678848999535340889999712-----------225412201-5788775379998-
Q gi|254780947|r  760 --G--------VKHKEALKETHTGVHVLTLSATPIPRTLQLAITG-----------VRELSLISM-PPINRIACRTSIS-  816 (1187)
Q Consensus       760 --G--------V~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g-----------~rd~S~i~t-pP~~R~~v~T~v~-  816 (1187)
T Consensus       565 e~~~rd~~s~~skyr~IldYF--DA~~iGLTATP~~~T~~~F--g~P~~~Ys~~eAV~DG~LVd~~~P---~~i~T~l~~  637 (1126)
T PRK11448        565 ELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIF--GEPVYTYSYREAVIDGYLIDHEPP---IRIETKLAK  637 (1126)
T ss_pred             HHCCCCHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCHHHHH--CCCCEEECHHHHHCCCCCCCCCCC---EEEEEEEEC
T ss_conf             010232024777899998762--1554047679995556770--997300058887304755688688---799756510


Q ss_pred             -----------------------------------ECCHHHH----HHHHHHHH----HHC--CEEEEEECCCCCHHHHH
Q ss_conf             -----------------------------------5797898----99999898----718--85999826446928899
Q gi|254780947|r  817 -----------------------------------IFDPLVV----RETLMREY----YRG--GQSFYVCPRLSDLEKCY  851 (1187)
Q Consensus       817 -----------------------------------~~~~~~i----~~ai~rEl----~Rg--GQvf~v~nrv~~i~~~~  851 (1187)
T Consensus       638 ~Gi~~~~~e~~~~~~~~~~~~~~~~~~de~~~~~~~fnr~v~~~~~nr~v~~~l~~~~~~~~~gKTiIFA~~~~HAd~Iv  717 (1126)
T PRK11448        638 EGIHFEKGEQVEVINTQTGEIDNDTLEDELDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFCVTDAHADMVV  717 (1126)
T ss_pred             CCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH
T ss_conf             46035876434420300000202558731337888827320383479999999998458899987699927869999999


Q ss_pred             HHHHHHC----C---CCCEEEEECCCCHHHHHHHHHHHHCCCC-CEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHH
Q ss_conf             9998616----5---4648886134674789999999963887-579761020036332233266762502358860455
Q gi|254780947|r  852 TFLQSEV----P---ELKIAMAHGQMSPKNLEDKMNAFYEGQY-DVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQ  923 (1187)
Q Consensus       852 ~~l~~l~----p---~~~i~vaHGqm~~~~le~~m~~F~~~~~-dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQ  923 (1187)
T Consensus       718 ~~l~e~F~~~y~~~~~~~~~~It~~~~--~~~~lI~~Fkn~~~P~IAVTVDmL~TGiDVPei~nLVF~R~V-~S~i~F~Q  794 (1126)
T PRK11448        718 RLLKEAFKKKYGQVEDDAIIKITGDAD--KVQQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV-KSRILYEQ  794 (1126)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEECCCC--CHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEC-CCHHHHHH
T ss_conf             999999886478767844899708884--478999972578998389985621047666420168876675-66778665


Q ss_pred             HHHHCCCC
Q ss_conf             32210356
Q gi|254780947|r  924 LRGRVGRS  931 (1187)
Q Consensus       924 lrGRVGRs  931 (1187)
T Consensus       795 MiGRGTRl  802 (1126)
T PRK11448        795 MKGRATRL  802 (1126)
T ss_pred             HHCCCCCC
T ss_conf             41675543