HHsearch alignment for GI: 254780947 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=99.89 E-value=1.6e-18 Score=161.51 Aligned_cols=374 Identities=18% Similarity=0.206 Sum_probs=257.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH---HHHHCCCCEEEEEECHH
Q ss_conf 787846789899848888874489999999876059885414431665432489999999---87511275499982436
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAA---FIAVMNGLQVAVIAPTT 684 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAa---fkav~~gkQvavlvPTT 684 (1187)
T Consensus 11 lgL~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~G------kDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTR 84 (629)
T PRK11634 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNG------RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCH
T ss_conf 798999999999879999999999999999679------98899788847899999999999866236898689978998
Q ss_pred HHHHHHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-HHH----CCCCCCCCCCEEEEECHHH
Q ss_conf 65558999999860678-98335410666302567777531225760898520-654----2785202365699722233
Q gi|254780947|r 685 LLVRQHFRLFSERFQGF-SVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-ALL----NPKITFANLGLIIIDEEQH 758 (1187)
Q Consensus 685 iLa~QH~~tf~~Rf~~~-pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~ll----~~~v~f~~LgLliiDEEqr 758 (1187)
T Consensus 85 ELA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~~q---~~~L~~g-~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD~ 160 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ---LRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH---HHHHCCC-CCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHHH
T ss_conf 9999999999999721799779999899778999---9986279-99999698999999972964120076789867155
Q ss_pred -----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECC--CCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf -----0088899886316788489995353408899997122254122015--788775379998579789899999898
Q gi|254780947|r 759 -----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMP--PINRIACRTSISIFDPLVVRETLMREY 831 (1187)
Q Consensus 759 -----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tp--P~~R~~v~T~v~~~~~~~i~~ai~rEl 831 (1187)
T Consensus 161 mL~~gF~~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~~~K~~aL~~~L 240 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 (629)
T ss_pred HCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 33636599999999867403144666314659999999987569879740455555776305999965245799999998
Q ss_pred H--HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEE
Q ss_conf 7--18859998264469288999998616546488861346747899999999638875797610200363322332667
Q gi|254780947|r 832 Y--RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMI 909 (1187)
Q Consensus 832 ~--RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTii 909 (1187)
T Consensus 241 ~~~~~~~~IIF~~Tk~~~~~l~~~L~~~--g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~~V~~VI 318 (629)
T PRK11634 241 EAEDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV 318 (629)
T ss_pred HHCCCCEEEEEEECHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 6158884899982278899999999976--99657656899999999999999759998898786210557725688899
Q ss_pred EECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHCCCC
Q ss_conf 6250235886045532-21035676736999966888889889999999997255-------652489999998511630
Q gi|254780947|r 910 VQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT-------LGAGFQLASYDLDIRGTG 981 (1187)
Q Consensus 910 i~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~-------lGsGf~iA~~DleiRGaG 981 (1187)
T Consensus 319 NyDlP~--d~e~YVHRiGRTGRaGr~G~Aitfv~~~------e~~~l~~ier~~~~~~~~~~~p~~~~i~~~r~~~~~-- 388 (629)
T PRK11634 319 NYDIPM--DSESYVHRIGRTGRAGRAGRALLFVENR------ERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFA-- 388 (629)
T ss_pred EECCCC--CHHHCCCCCCCCCCCCCCEEEEEEECHH------HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHH--
T ss_conf 968989--7434010258331689964699988889------999999999997798601489699999999999999--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 00461115538983389999999999
Q gi|254780947|r 982 NLLGEEQSGHIREIGFELYQKMLEET 1007 (1187)
Q Consensus 982 ~llG~~QsG~i~~vG~~ly~~ml~~a 1007 (1187)
T Consensus 389 ----~~~~~~~~~~~~~~~~~~~~~~ 410 (629)
T PRK11634 389 ----AKVQQQLESSDLDQYRALLAKI 410 (629)
T ss_pred ----HHHHHHHHCCCHHHHHHHHHHH
T ss_conf ----9998875125468999999997