HHsearch alignment for GI: 254780947 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=95.98 E-value=0.077 Score=32.91 Aligned_cols=88 Identities=8% Similarity=0.116 Sum_probs=54.8
Q ss_pred CCEEEECCCCCCHHHHHHH--HHHH---C-CC-CEEEEECCHHHHHHHHHHHHHHCCC---CEEEECCCCCCCCHHCCCC
Q ss_conf 8608980376522799999--9986---2-99-8999929989999999999985799---8099857224670100489
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILA--EIAR---L-GL-SLVYICSDERILINLKKILTLVVPD---IRVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla--~l~~---~-~r-pilvI~~d~~~A~~l~~dL~~f~~~---~~V~~FP~~E~LPYd~~sp 84 (1187)
T Consensus 43 GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRELA~QV~~~~~~l~~~~~~i~v~~l-------~GG~~~ 115 (629)
T PRK11634 43 GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVAL-------YGGQRY 115 (629)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEE-------ECCCCH
T ss_conf 9988997888478999999999998662368986899789989999999999999721799779999-------899778
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf 98999999999999841244688769995667852369
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS 122 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl 122 (1187)
T Consensus 116 ~~-----q---~~~L~-----~g~~IVVgTPGRL~d~l 140 (629)
T PRK11634 116 DV-----Q---LRALR-----QGPQIVVGTPGRLLDHL 140 (629)
T ss_pred HH-----H---HHHHC-----CCCCEEEECHHHHHHHH
T ss_conf 99-----9---99862-----79999996989999999