HHsearch alignment for GI: 254780947 and conserved domain: PRK11634

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=95.98  E-value=0.077  Score=32.91  Aligned_cols=88  Identities=8%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             CCEEEECCCCCCHHHHHHH--HHHH---C-CC-CEEEEECCHHHHHHHHHHHHHHCCC---CEEEECCCCCCCCHHCCCC
Q ss_conf             8608980376522799999--9986---2-99-8999929989999999999985799---8099857224670100489
Q gi|254780947|r   15 CKKITLSPVIDGTEGFILA--EIAR---L-GL-SLVYICSDERILINLKKILTLVVPD---IRVIIFPAWDCLPYDRVSP   84 (1187)
Q Consensus        15 ~~~i~l~Gl~gs~~allla--~l~~---~-~r-pilvI~~d~~~A~~l~~dL~~f~~~---~~V~~FP~~E~LPYd~~sp   84 (1187)
T Consensus        43 GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRELA~QV~~~~~~l~~~~~~i~v~~l-------~GG~~~  115 (629)
T PRK11634         43 GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVAL-------YGGQRY  115 (629)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEE-------ECCCCH
T ss_conf             9988997888478999999999998662368986899789989999999999999721799779999-------899778


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf             98999999999999841244688769995667852369
Q gi|254780947|r   85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS  122 (1187)
Q Consensus        85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl  122 (1187)
T Consensus       116 ~~-----q---~~~L~-----~g~~IVVgTPGRL~d~l  140 (629)
T PRK11634        116 DV-----Q---LRALR-----QGPQIVVGTPGRLLDHL  140 (629)
T ss_pred             HH-----H---HHHHC-----CCCCEEEECHHHHHHHH
T ss_conf             99-----9---99862-----79999996989999999