HHsearch alignment for GI: 254780947 and conserved domain: PRK11664

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=99.38  E-value=9.4e-09  Score=86.17  Aligned_cols=416  Identities=18%  Similarity=0.197  Sum_probs=261.6

Q ss_pred             HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH-HHCCCCEEEEEECHHHHHHHHHHHH-HHHHCCCCCCEEEECCCC
Q ss_conf             99987605988541443166543248999999987-5112754999824366555899999-986067898335410666
Q gi|254780947|r  635 DAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFI-AVMNGLQVAVIAPTTLLVRQHFRLF-SERFQGFSVRIASISRFV  712 (1187)
Q Consensus       635 ~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafk-av~~gkQvavlvPTTiLa~QH~~tf-~~Rf~~~pv~i~~lsRf~  712 (1187)
T Consensus        11 ~~i~~~l~~~~~--~vl~a~tGsGKtTqvP~~ll~~~~~~g-~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e   87 (812)
T PRK11664         11 PELLTALKTAPQ--VLLKAPTGAGKSTWLPLQLLQQGGING-KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE   87 (812)
T ss_pred             HHHHHHHHHCCE--EEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             999999997997--999908999989999999996468899-38993883999999999999972999998675782567


Q ss_pred             CCHHHHHHHHHHCCCCCEEEEECHH----HHCCCCCCCCCCEEEEECHHHHHHHH-------HHHHHHCCCCCCEEEEEC
Q ss_conf             3025677775312257608985206----54278520236569972223300888-------998863167884899953
Q gi|254780947|r  713 QTKEAALHKKSITEGQVDIVIGTHA----LLNPKITFANLGLIIIDEEQHFGVKH-------KEALKETHTGVHVLTLSA  781 (1187)
Q Consensus       713 ~~~e~~~i~~~l~~G~idiviGTH~----ll~~~v~f~~LgLliiDEEqrFGV~~-------Ke~lk~~~~~vdvLtlsA  781 (1187)
T Consensus        88 ~~~s----------~~Tri~~~T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvMSA  157 (812)
T PRK11664         88 SKVG----------PNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA  157 (812)
T ss_pred             CCCC----------CCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             7889----------985799975589999972497767788899957546875189999999999986189828999847


Q ss_pred             CCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECC-----HHHHHHHHHHHHH-HCCEEEEEECCCCCHHHHHHHHH
Q ss_conf             53408899997122254122015788775379998579-----7898999998987-18859998264469288999998
Q gi|254780947|r  782 TPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFD-----PLVVRETLMREYY-RGGQSFYVCPRLSDLEKCYTFLQ  855 (1187)
Q Consensus       782 TPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~-----~~~i~~ai~rEl~-RgGQvf~v~nrv~~i~~~~~~l~  855 (1187)
T Consensus       158 Tld~~~~~~~~~---~~~~i~~-~gr~fpV~~~y~~~~~~~~~~~~~~~~i~~~~~~~~G~iLvFLPG~~EI~~~~~~L~  233 (812)
T PRK11664        158 TLDNDRLQQLLP---DAPYIES-EGRSFPVERRYQPLPAHQRFDEAVAVATAELLRQESGSLLLFLPGVGEIQRVQEQLA  233 (812)
T ss_pred             CCCHHHHHHHCC---CCCEEEE-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf             888488997589---9988987-874331157854688520699999999999973589988997699899999999986


Q ss_pred             HHCC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECH--------HHCCCC-------
Q ss_conf             6165-464888613467478999999996388757976102003633223326676250--------235886-------
Q gi|254780947|r  856 SEVP-ELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRA--------DMFGLA-------  919 (1187)
Q Consensus       856 ~l~p-~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~a--------d~~GLa-------  919 (1187)
T Consensus       234 ~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~V-IDsG~~r~~~~d~~~g~~~L~~~~i  312 (812)
T PRK11664        234 SRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLV-VDSGLERVARFDPKTGLTRLETQRI  312 (812)
T ss_pred             HHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEE-EECHHHHHHEECCCCCCCEEEEEEC
T ss_conf             335578089964478998898776067999953799950200020201781489-7402234432343579756767704


Q ss_pred             ---HHHHHHHHCCCCCCCCEEEEEECCC-------CCCCHHHHHHHHH-HHHHCCCC---------------HHHHHHHH
Q ss_conf             ---0455322103567673699996688-------8889889999999-99725565---------------24899999
Q gi|254780947|r  920 ---QLYQLRGRVGRSKIASFALFLLPEN-------RPLTAAAQKRLRI-LQSLNTLG---------------AGFQLASY  973 (1187)
Q Consensus       920 ---qlyQlrGRVGRs~~~ayayl~~~~~-------~~l~~~a~kRL~a-i~~~~~lG---------------sGf~iA~~  973 (1187)
T Consensus       313 Skasa~QRaGRAGR~-~pG~cyRL~s~~~~~~~~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~a~~~A~~  391 (812)
T PRK11664        313 SQASMTQRAGRAGRL-EPGICLHLYAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQLSWLDQPPAVNLAAAKR  391 (812)
T ss_pred             CHHHHHCCCCCCCCC-CCCEEEEEECHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHH
T ss_conf             544353136767888-9970787335988852746998055527689999999965999877687999979899999999


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHHH--------HHHHHHHHH-------------HHHCCCCCCCCCCCCEEECCCCC
Q ss_conf             985116300046111553898338999--------999999999-------------98288876766665256548851
Q gi|254780947|r  974 DLDIRGTGNLLGEEQSGHIREIGFELY--------QKMLEETVA-------------SIKGQKDLVESDWSPQVLIEASV 1032 (1187)
Q Consensus       974 DleiRGaG~llG~~QsG~i~~vG~~ly--------~~ml~~av~-------------~~kg~~~~~~~~~~~~i~~~~~~ 1032 (1187)
T Consensus       392 ~L~~LgAld-----~~g~lT~~G~~ma~lP~~Prla~mll~a~~~~~~~~~~a~~~aall~e~~----------------  450 (812)
T PRK11664        392 LLQMLGALD-----GEGQLTARGRKMAALGNDPRLAAMLVSAKEDDEAALATAAKLAAILEEPP----------------  450 (812)
T ss_pred             HHHHCCCCC-----CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC----------------
T ss_conf             999777876-----66854689999972779947999999745328246889999999705856----------------


Q ss_pred             CCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHCCC
Q ss_conf             167343899888999999875089989999999997762488988-99999999999999998697
Q gi|254780947|r 1033 MIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPI-EVIHLLKVVFLKLLCRIANI 1097 (1187)
Q Consensus      1033 ~ip~~yi~d~~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG~~P~-~~~~l~~~~~lk~~~~~~~i 1097 (1187)
T Consensus       451 ---~~~~~dl~~~l~~---~-~~~~~~~~~~l~~~~~~~~~~~~~~~~g~lla~AfPDRIArrRg~  509 (812)
T PRK11664        451 ---RSGNSDLSVALSR---N-QPGWQQRAQQLLKRLNVRGGEVDSSLIAPLLALAFPDRIARRRGQ  509 (812)
T ss_pred             ---CCCCCCHHHHHHH---H-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHCC
T ss_conf             ---6887479999865---3-434568999999986540489986789999999785999886189