HHsearch alignment for GI: 254780947 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=94.10 E-value=0.5 Score=26.68 Aligned_cols=89 Identities=11% Similarity=0.199 Sum_probs=56.1
Q ss_pred CCEEEECCCCCCHHHHHH--HHHHHC----CC-CEEEEECCHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCHHCCCC
Q ss_conf 860898037652279999--999862----99-89999299899999999999857---998099857224670100489
Q gi|254780947|r 15 CKKITLSPVIDGTEGFIL--AEIARL----GL-SLVYICSDERILINLKKILTLVV---PDIRVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~alll--a~l~~~----~r-pilvI~~d~~~A~~l~~dL~~f~---~~~~V~~FP~~E~LPYd~~sp 84 (1187)
T Consensus 41 G~Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~~l-------~GG~~~ 113 (459)
T PRK11776 41 GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTL-------CGGVPM 113 (459)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEE-------ECCCCH
T ss_conf 9988998899858999999999984113678985999967599999999999999850588259999-------899327
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCC
Q ss_conf 989999999999998412446887699956678523699
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSV 123 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklp 123 (1187)
T Consensus 114 -----~~q~~~L~--------~~~~IvV~TPGRl~d~l~ 139 (459)
T PRK11776 114 -----GPQIGSLE--------HGAHIIVGTPGRILDHLR 139 (459)
T ss_pred -----HHHHHHHH--------CCCCEEEECCHHHHHHHH
T ss_conf -----99999974--------699999989589998875