HHsearch alignment for GI: 254780947 and conserved domain: PRK11776

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=94.10  E-value=0.5  Score=26.68  Aligned_cols=89  Identities=11%  Similarity=0.199  Sum_probs=56.1

Q ss_pred             CCEEEECCCCCCHHHHHH--HHHHHC----CC-CEEEEECCHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCHHCCCC
Q ss_conf             860898037652279999--999862----99-89999299899999999999857---998099857224670100489
Q gi|254780947|r   15 CKKITLSPVIDGTEGFIL--AEIARL----GL-SLVYICSDERILINLKKILTLVV---PDIRVIIFPAWDCLPYDRVSP   84 (1187)
Q Consensus        15 ~~~i~l~Gl~gs~~alll--a~l~~~----~r-pilvI~~d~~~A~~l~~dL~~f~---~~~~V~~FP~~E~LPYd~~sp   84 (1187)
T Consensus        41 G~Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~~l-------~GG~~~  113 (459)
T PRK11776         41 GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTL-------CGGVPM  113 (459)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEE-------ECCCCH
T ss_conf             9988998899858999999999984113678985999967599999999999999850588259999-------899327


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCC
Q ss_conf             989999999999998412446887699956678523699
Q gi|254780947|r   85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSV  123 (1187)
Q Consensus        85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklp  123 (1187)
T Consensus       114 -----~~q~~~L~--------~~~~IvV~TPGRl~d~l~  139 (459)
T PRK11776        114 -----GPQIGSLE--------HGAHIIVGTPGRILDHLR  139 (459)
T ss_pred             -----HHHHHHHH--------CCCCEEEECCHHHHHHHH
T ss_conf             -----99999974--------699999989589998875