HHsearch alignment for GI: 254780947 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=99.87 E-value=9.1e-20 Score=171.07 Aligned_cols=294 Identities=22% Similarity=0.321 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH--HHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89999999876059885414431665432489999999--8751127549998243665558999999860678983354
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAA--FIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIAS 707 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAa--fkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~ 707 (1187)
T Consensus 20 Q~el~~~Al~---~----NtiVvLPTG~GKT~IA~lvi~~~l~-~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~ 91 (764)
T PRK13766 20 QQLLAAKALK---G----NTLVVLPTGLGKTAIALLVIAERLQ-KYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVV 91 (764)
T ss_pred HHHHHHHHHH---C----CEEEEECCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999999985---8----9899959986689999999999997-489889998588889999999999970999552899
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCEEEEECHHHH-----CCCCCCCCCCEEEEECHHHHHHHHH-----HHHHHCCCCCCEE
Q ss_conf 10666302567777531225760898520654-----2785202365699722233008889-----9886316788489
Q gi|254780947|r 708 ISRFVQTKEAALHKKSITEGQVDIVIGTHALL-----NPKITFANLGLIIIDEEQHFGVKHK-----EALKETHTGVHVL 777 (1187)
Q Consensus 708 lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll-----~~~v~f~~LgLliiDEEqrFGV~~K-----e~lk~~~~~vdvL 777 (1187)
T Consensus 92 ltG~~~~~~r~~~w~-----~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~~~~~PrIL 166 (764)
T PRK13766 92 LTGEISPEKRAALWE-----KAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHEDAKNPLVL 166 (764)
T ss_pred EECCCCHHHHHHHHC-----CCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 988878276899860-----799999990899999982986788822899974666667762899999998537785588
Q ss_pred EEECCCCCHHHH-----HHHHCCCCCCEEECCC---------CCCCCEEEEEEECCHHH------HHHHHH---HHHHHC
Q ss_conf 995353408899-----9971222541220157---------88775379998579789------899999---898718
Q gi|254780947|r 778 TLSATPIPRTLQ-----LAITGVRELSLISMPP---------INRIACRTSISIFDPLV------VRETLM---REYYRG 834 (1187)
Q Consensus 778 tlsATPIPRTL~-----msl~g~rd~S~i~tpP---------~~R~~v~T~v~~~~~~~------i~~ai~---rEl~Rg 834 (1187)
T Consensus 167 GLTASPGs-~~e~I~ev~~nL~---i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~~~i~~~l~~~l~~~l~~L~~~ 242 (764)
T PRK13766 167 GLTASPGS-DEEKIKEVCENLG---IEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (764)
T ss_pred EECCCCCC-CHHHHHHHHHHCC---CCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 50368876-4489999998659---8728961444434454335673279980797899999999999999999999966
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 8-------------------------------------------------------------------------------
Q gi|254780947|r 835 G------------------------------------------------------------------------------- 835 (1187)
Q Consensus 835 G------------------------------------------------------------------------------- 835 (1187)
T Consensus 243 ~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ell~tqg~~~~~~yl~~l~~~~~~~~~k~~ 322 (764)
T PRK13766 243 GVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGSKAS 322 (764)
T ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 97004555468999999999999988646879999999999999999999999985189999999999973013332678
Q ss_pred -------------------------------------------EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC----
Q ss_conf -------------------------------------------599982644692889999986165464888613----
Q gi|254780947|r 836 -------------------------------------------QSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHG---- 868 (1187)
Q Consensus 836 -------------------------------------------Qvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHG---- 868 (1187)
T Consensus 323 k~l~~d~~~~~~~~~~~~~~~~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~--~~ik~~~fVGq~s~ 400 (764)
T PRK13766 323 KRLVEDPRFKKAVRLLKELDIEHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNK--NGIKAIRFVGQASR 400 (764)
T ss_pred HHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH--CCCCCEEEEECCCC
T ss_conf 9987587789999987644678937999999999997269998089992767999999999865--89972289836898
Q ss_pred ----CCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf ----4674789999999963887579761020036332233266762502358860455322103567673699996688
Q gi|254780947|r 869 ----QMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 869 ----qm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
T Consensus 401 ~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~v~S~I-R~IQR~GRTGR-~r~G~v~vLi~~g 478 (764)
T PRK13766 401 DGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEPVPSEI-RSIQRKGRTGR-QRGGRVVVLIAKG 478 (764)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHH-HHHHHCCCCCC-CCCCEEEEEEECC
T ss_conf 788898989999999998579988898767664488887788899937996199-99997466567-7897499999568