HHsearch alignment for GI: 254780947 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=99.87  E-value=9.1e-20  Score=171.07  Aligned_cols=294  Identities=22%  Similarity=0.321  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH--HHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             89999999876059885414431665432489999999--8751127549998243665558999999860678983354
Q gi|254780947|r  630 QEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAA--FIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIAS  707 (1187)
Q Consensus       630 Q~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAa--fkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~  707 (1187)
T Consensus        20 Q~el~~~Al~---~----NtiVvLPTG~GKT~IA~lvi~~~l~-~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~   91 (764)
T PRK13766         20 QQLLAAKALK---G----NTLVVLPTGLGKTAIALLVIAERLQ-KYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVV   91 (764)
T ss_pred             HHHHHHHHHH---C----CEEEEECCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             9999999985---8----9899959986689999999999997-489889998588889999999999970999552899


Q ss_pred             ECCCCCCHHHHHHHHHHCCCCCEEEEECHHHH-----CCCCCCCCCCEEEEECHHHHHHHHH-----HHHHHCCCCCCEE
Q ss_conf             10666302567777531225760898520654-----2785202365699722233008889-----9886316788489
Q gi|254780947|r  708 ISRFVQTKEAALHKKSITEGQVDIVIGTHALL-----NPKITFANLGLIIIDEEQHFGVKHK-----EALKETHTGVHVL  777 (1187)
Q Consensus       708 lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll-----~~~v~f~~LgLliiDEEqrFGV~~K-----e~lk~~~~~vdvL  777 (1187)
T Consensus        92 ltG~~~~~~r~~~w~-----~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~~~~~PrIL  166 (764)
T PRK13766         92 LTGEISPEKRAALWE-----KAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHEDAKNPLVL  166 (764)
T ss_pred             EECCCCHHHHHHHHC-----CCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf             988878276899860-----799999990899999982986788822899974666667762899999998537785588


Q ss_pred             EEECCCCCHHHH-----HHHHCCCCCCEEECCC---------CCCCCEEEEEEECCHHH------HHHHHH---HHHHHC
Q ss_conf             995353408899-----9971222541220157---------88775379998579789------899999---898718
Q gi|254780947|r  778 TLSATPIPRTLQ-----LAITGVRELSLISMPP---------INRIACRTSISIFDPLV------VRETLM---REYYRG  834 (1187)
Q Consensus       778 tlsATPIPRTL~-----msl~g~rd~S~i~tpP---------~~R~~v~T~v~~~~~~~------i~~ai~---rEl~Rg  834 (1187)
T Consensus       167 GLTASPGs-~~e~I~ev~~nL~---i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~~~i~~~l~~~l~~~l~~L~~~  242 (764)
T PRK13766        167 GLTASPGS-DEEKIKEVCENLG---IEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEELKEIRDLLNEALKDRLKKLKEL  242 (764)
T ss_pred             EECCCCCC-CHHHHHHHHHHCC---CCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             50368876-4489999998659---8728961444434454335673279980797899999999999999999999966


Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             8-------------------------------------------------------------------------------
Q gi|254780947|r  835 G-------------------------------------------------------------------------------  835 (1187)
Q Consensus       835 G-------------------------------------------------------------------------------  835 (1187)
T Consensus       243 ~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ell~tqg~~~~~~yl~~l~~~~~~~~~k~~  322 (764)
T PRK13766        243 GVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGSKAS  322 (764)
T ss_pred             CCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             97004555468999999999999988646879999999999999999999999985189999999999973013332678


Q ss_pred             -------------------------------------------EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC----
Q ss_conf             -------------------------------------------599982644692889999986165464888613----
Q gi|254780947|r  836 -------------------------------------------QSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHG----  868 (1187)
Q Consensus       836 -------------------------------------------Qvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHG----  868 (1187)
T Consensus       323 k~l~~d~~~~~~~~~~~~~~~~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~--~~ik~~~fVGq~s~  400 (764)
T PRK13766        323 KRLVEDPRFKKAVRLLKELDIEHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNK--NGIKAIRFVGQASR  400 (764)
T ss_pred             HHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH--CCCCCEEEEECCCC
T ss_conf             9987587789999987644678937999999999997269998089992767999999999865--89972289836898


Q ss_pred             ----CCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             ----4674789999999963887579761020036332233266762502358860455322103567673699996688
Q gi|254780947|r  869 ----QMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN  944 (1187)
Q Consensus       869 ----qm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~  944 (1187)
T Consensus       401 ~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~v~S~I-R~IQR~GRTGR-~r~G~v~vLi~~g  478 (764)
T PRK13766        401 DGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEPVPSEI-RSIQRKGRTGR-QRGGRVVVLIAKG  478 (764)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHH-HHHHHCCCCCC-CCCCEEEEEEECC
T ss_conf             788898989999999998579988898767664488887788899937996199-99997466567-7897499999568