HHsearch alignment for GI: 254780947 and conserved domain: PTZ00110
>PTZ00110 helicase; Provisional.
Probab=95.57 E-value=0.18 Score=30.12 Aligned_cols=247 Identities=14% Similarity=0.151 Sum_probs=138.1
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 79829999589458999998677648873323452245520466847999810446874665688712001373111221
Q gi|254780947|r 407 KGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGKKIARRV 486 (1187)
Q Consensus 407 ~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~~~~~~~~~~i~i~~~~L~~GF~~~kl~vITE~EIFG~k~~~r~ 486 (1187)
T Consensus 254 ~gP~aLILaPTRELA~QI~~e~~~~~~~~--------------~ir~~~---------------------i~GG~~~~~Q 298 (602)
T PTZ00110 254 DGPIVLVLAPTRELAEQIREQALQFGRSS--------------KLKNSV---------------------AYGGVPKRFQ 298 (602)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCC--------------CCEEEE---------------------EECCCCHHHH
T ss_conf 99769997383999999999999971547--------------854999---------------------9799687999
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCC--CEEEEEHHHHHHHHHHCCCCCC
Q ss_conf 22222221101224440323511203554233112310145666663599998699--8799666752111100367888
Q gi|254780947|r 487 VRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADN--AKLFVPVENIDLISRYSTEITT 564 (1187)
Q Consensus 487 ~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~--DkLYVPv~~l~lIskYg~~~~~ 564 (1187)
T Consensus 299 ~~~L~~G~dIvV----ATPGRLiDlL~~~~---~~L~~-------v~yLVLDEADRMLDmGFe--~qI~~Il~~i~p--- 359 (602)
T PTZ00110 299 TYALRRGVEILI----ACPGRLIDFLESNV---TNLRR-------VTYLVLDEADRMLDMGFE--PQIRKIVSQIRP--- 359 (602)
T ss_pred HHHHCCCCCEEE----ECCHHHHHHHHCCC---CCCCC-------EEEEEEECHHHHHCCCCH--HHHHHHHHHCCC---
T ss_conf 998716999999----79238999996499---87431-------028998757766354629--999999985897---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 53234340348999999999999999999999998874015677878467898998488888744899999998760598
Q gi|254780947|r 565 VTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSG 644 (1187)
Q Consensus 565 p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~ 644 (1187)
T Consensus 360 dRQTlLFSAT~p~-------~V~~LA~~~L~~~Pv~I~Vg~~~~~-----------------------a~~~I~Q~v--- 406 (602)
T PTZ00110 360 DRQTLMWSATWPK-------EVQSLARDLCKEEPVHVNVGSLDLT-----------------------TCHNIKQEV--- 406 (602)
T ss_pred CCEEEEEECCCCH-------HHHHHHHHHHCCCCEEEEECCCCCC-----------------------CCCCCEEEE---
T ss_conf 8779999558998-------9999999982069889993688877-----------------------778705899---
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 85414431665432489999999875112754999824366555899999986067898335410666302567777531
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSI 724 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l 724 (1187)
T Consensus 407 -----~vv~~---~eK~~~L~~lL~~~~~~~kvIIFvnTK~~ad~L~~~L~--~~G~--~a~~LHGd~~Q~eR~~~L~~F 474 (602)
T PTZ00110 407 -----FVIEE---HEKRAKLKELLGQIMDGGKILIFSETKKGADTLTKELR--LDGW--PALCIHGDKKQEERTWVLNEF 474 (602)
T ss_pred -----EEECH---HHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHH--HCCC--CEEEEECCCCHHHHHHHHHHH
T ss_conf -----99651---88999999999852789968999297389999999998--6799--579820889999999999999
Q ss_pred CCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf 22576089852065427852023656997
Q gi|254780947|r 725 TEGQVDIVIGTHALLNPKITFANLGLIII 753 (1187)
Q Consensus 725 ~~G~idiviGTH~ll~~~v~f~~LgLlii 753 (1187)
T Consensus 475 r~G~~~ILVAT-DVAARGLDI~dV~~VIN 502 (602)
T PTZ00110 475 KTGKHPIMIAT-DVASRGLDVRDVKYVIN 502 (602)
T ss_pred HCCCCCEEEEC-CHHHCCCCCCCCCEEEE
T ss_conf 76999889882-22331555157987999