HHsearch alignment for GI: 254780947 and conserved domain: TIGR00595
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=93.37 E-value=0.23 Score=29.28 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=62.0
Q ss_pred ECCCCCCHHHHHHHH-H---HHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHHH
Q ss_conf 803765227999999-9---862998999929989999999999985799809985722467010048998999999999
Q gi|254780947|r 20 LSPVIDGTEGFILAE-I---ARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSC 95 (1187)
Q Consensus 20 l~Gl~gs~~allla~-l---~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~~ 95 (1187)
T Consensus 2 l~G~tGsGkte~y~~~~~~~l~~g~~~~~l~Pei~l~~q~~~~~~~~fg~~~-~~~-------h~~----~l~~~~~~~~ 69 (524)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALGKSALVLVPEIALTPQTLQRFKGRFGSQV-AVL-------HSG----KLSDSEKLDA 69 (524)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCH-HHH-------CCC----CCCCHHHHHH
T ss_conf 5456788616888999999973377178970421101678999999718720-101-------001----3673456889
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHCCCCC
Q ss_conf 99984124468876999566785236998
Q gi|254780947|r 96 ISNLVSFNSSKETIIVLTTVSAVMCRSVN 124 (1187)
Q Consensus 96 L~~L~~~~~~~~~~IIVtt~~ALlqklpp 124 (1187)
T Consensus 70 w~~~~----~g~~~~v~G~rsa~f~P~~~ 94 (524)
T TIGR00595 70 WRKVK----LGEALVVIGTRSALFLPLKN 94 (524)
T ss_pred HHHHH----CCCCEEEECCCHHHHCCCCC
T ss_conf 99985----18600564030343246211