HHsearch alignment for GI: 254780947 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=100.00 E-value=0 Score=492.77 Aligned_cols=547 Identities=18% Similarity=0.269 Sum_probs=423.7
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEC------------
Q ss_conf 778876514886089803765227999999-9862998999929989999999999985799809985------------
Q gi|254780947|r 5 SDIERISEKYCKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF------------ 71 (1187)
Q Consensus 5 ~~~~~~~~k~~~~i~l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~F------------ 71 (1187)
T Consensus 20 ~L~~~l-~~G~~~QtLLGvTGsGKTFT~AnVIa~~~rPTLV~aHNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQPEAY 98 (667)
T TIGR00631 20 KLVEGL-EAGEKEQTLLGVTGSGKTFTMANVIAQVQRPTLVLAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAY 98 (667)
T ss_pred HHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 999998-5688714785321486278898999984798499857776799999999863867724525520323787321
Q ss_pred -CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf -7224670100489989999999999998412446887699956678523699866885154899409741999999999
Q gi|254780947|r 72 -PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKL 150 (1187)
Q Consensus 72 -P~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~L 150 (1187)
T Consensus 99 vP~~DtyIEKdaSINdeIerlR~SAT~SLl~----RrDVIVVASVScI-YGLG~P~~Y~~~~~~l~vG~~~~~~~ll~~L 173 (667)
T TIGR00631 99 VPSKDTYIEKDASINDEIERLRLSATKSLLE----RRDVIVVASVSCI-YGLGSPEEYLKMVLHLEVGKEIDRRELLRRL 173 (667)
T ss_pred CCCCCCEEECCCCHHHHHHHHHHHHHHHHCC----CCCEEEEEEEEEE-CCCCCCHHHHCCEEEEEECCCCCHHHHHHHH
T ss_conf 4798841304553004676778898886423----7878999875520-6888825564227865407855889999886
Q ss_pred HHCCCEECCCCCCCCEEEEECCEEEEEC-CCCCC-CEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHH
Q ss_conf 9828845545217831654574757306-98887-268863487221015451374853122216999437732179999
Q gi|254780947|r 151 ETNGFQRVNAVYKVGEYAVRGGILDVYE-PTKKY-PVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQN 228 (1187)
Q Consensus 151 v~~GY~Rv~~Ve~~GEFAvRGgIIDIFp-~~~~~-PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~ 228 (1187)
T Consensus 174 V~lqY~RNd~~f~RG~FRvrGDVvEIfP~~~~~~~~~RiEfF~DEie~I~~~dpLtg~~~~~~~~~~ifPA~HyV~p~e~ 253 (667)
T TIGR00631 174 VELQYERNDVDFQRGTFRVRGDVVEIFPAAYEDEFAVRIEFFGDEIERISLVDPLTGEVLRELDSFTIFPASHYVTPEER 253 (667)
T ss_pred HHHCEEECCEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEHHHHCCCCCCHHHHCCCEEEECCCEECCCCHH
T ss_conf 34030571234057712576318986347767772489985255432021205110511100561586054000258047
Q ss_pred HHHHHHHHHHHCCCCHH-----------------HCHHHHHHHCCCCCCCHHHHHHHHH-----CCCCCCCCCC---CCC
Q ss_conf 99999999974173700-----------------1577789977898788777677761-----4876767334---676
Q gi|254780947|r 229 ISRFRENYLANFGTTTQ-----------------EDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFPYL---SEF 283 (1187)
Q Consensus 229 i~~fr~~~r~~f~~~~~-----------------~~~i~e~Is~g~~~~GiE~yLPlFy-----e~~~tLfDYL---p~~ 283 (1187)
T Consensus 254 ~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIENYSRhl~GR~~GEpP~tLlDYF~gfP~D 333 (667)
T TIGR00631 254 LERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIENYSRHLSGRKPGEPPYTLLDYFIGFPED 333 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 99999999999999999998779517888898868877888750673377000000216777631596477650468865
Q ss_pred CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCC---CCCCCC
Q ss_conf 13346535899998899999998999998652220265567850211699899999751146089626753---222246
Q gi|254780947|r 284 CIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFN---QQETAH 360 (1187)
Q Consensus 284 ~iii~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~---~~~~~~ 360 (1187)
T Consensus 334 fLlviDESHVT~PQ----~~GMY~GD~SRK~~LVeYGFRLPSAlDNRPLkfeEF~~~~---~Q~vyVSATPG~~E~e~S~ 406 (667)
T TIGR00631 334 FLLVIDESHVTLPQ----IGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEERI---NQVVYVSATPGDYELEQSG 406 (667)
T ss_pred EEEEEEECCCCHHH----HHHHHHCCHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHC---CCEEEEECCCCHHHHHHHC
T ss_conf 08988402575022----1344130467654332027753001358789879999855---9889996388589997326
Q ss_pred CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 73377641466566820010011222200018589999999999867982999958945899999867764887332345
Q gi|254780947|r 361 NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKIN 440 (1187)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~ 440 (1187)
T Consensus 407 ~~vvEQiiRPTGLlDP~i-------~VRP~~gQvdDL~~EI~~R~~~~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHS 479 (667)
T TIGR00631 407 GNVVEQIIRPTGLLDPEI-------EVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHS 479 (667)
T ss_pred CCEEEEEECCCCCCCCEE-------EEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 915899873778648836-------8835851588889999999972894899820167788999997058837987145
Q ss_pred CHHH------HHCCCCCCEEEEECC--CCCCCCCCC--EEEEECCCCCCCCCCCC----CC--CCCCCCCCCC-------
Q ss_conf 2245------520466847999810--446874665--68871200137311122----12--2222221101-------
Q gi|254780947|r 441 TLTE------INSLLKEEIAAVILP--INQGFETKH--MILVTETDLLGKKIARR----VV--RKKNVHAQSF------- 497 (1187)
Q Consensus 441 ~~~~------~~~~~~~~i~i~~~~--L~~GF~~~k--l~vITE~EIFG~k~~~r----~~--rkk~~~~~~i------- 497 (1187)
T Consensus 480 eIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEGFLRSerSLIQTIGRAARN~~G~VilYAD~iT 559 (667)
T TIGR00631 480 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKIT 559 (667)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 57899999999984478840886000200246511488997632788899866302788988875257965999728700
Q ss_pred -----------------CCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECC-CCEEEEEHHHHHHHHHHC
Q ss_conf -----------------22444032351120355423311231014566666359999869-987996667521111003
Q gi|254780947|r 498 -----------------FDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYAD-NAKLFVPVENIDLISRYS 559 (1187)
Q Consensus 498 -----------------~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~-~DkLYVPv~~l~lIskYg 559 (1187)
T Consensus 560 ~sM~~AI~ET~RRR~~Q~~YNe----------------~HgItP~ti~K~i~~~~~~~~~~~~~~~-----~~~~~~~~~ 618 (667)
T TIGR00631 560 DSMQKAIEETERRRKIQIAYNE----------------EHGITPQTIRKKIKDILDIELKEKEDAA-----KKKKKGKVA 618 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HCCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHCCCCHH
T ss_conf 7899999987888999999997----------------5389788540568887777764445555-----532023112
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6788853234340348999999999999999999
Q gi|254780947|r 560 TEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKL 593 (1187)
Q Consensus 560 ~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eL 593 (1187)
T Consensus 619 ~~~-~~~~~~~~~~e~~~~I~~Le~~M~~aA~~l 651 (667)
T TIGR00631 619 EEP-AEDASDLSEKELKKLIKQLEKEMKQAARNL 651 (667)
T ss_pred HHH-HCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 221-031320898799999999999999999752