HHsearch alignment for GI: 254780947 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=100.00  E-value=0  Score=492.77  Aligned_cols=547  Identities=18%  Similarity=0.269  Sum_probs=423.7

Q ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEC------------
Q ss_conf             778876514886089803765227999999-9862998999929989999999999985799809985------------
Q gi|254780947|r    5 SDIERISEKYCKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF------------   71 (1187)
Q Consensus         5 ~~~~~~~~k~~~~i~l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~F------------   71 (1187)
T Consensus        20 ~L~~~l-~~G~~~QtLLGvTGsGKTFT~AnVIa~~~rPTLV~aHNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQPEAY   98 (667)
T TIGR00631        20 KLVEGL-EAGEKEQTLLGVTGSGKTFTMANVIAQVQRPTLVLAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAY   98 (667)
T ss_pred             HHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf             999998-5688714785321486278898999984798499857776799999999863867724525520323787321


Q ss_pred             -CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf             -7224670100489989999999999998412446887699956678523699866885154899409741999999999
Q gi|254780947|r   72 -PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKL  150 (1187)
Q Consensus        72 -P~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~L  150 (1187)
T Consensus        99 vP~~DtyIEKdaSINdeIerlR~SAT~SLl~----RrDVIVVASVScI-YGLG~P~~Y~~~~~~l~vG~~~~~~~ll~~L  173 (667)
T TIGR00631        99 VPSKDTYIEKDASINDEIERLRLSATKSLLE----RRDVIVVASVSCI-YGLGSPEEYLKMVLHLEVGKEIDRRELLRRL  173 (667)
T ss_pred             CCCCCCEEECCCCHHHHHHHHHHHHHHHHCC----CCCEEEEEEEEEE-CCCCCCHHHHCCEEEEEECCCCCHHHHHHHH
T ss_conf             4798841304553004676778898886423----7878999875520-6888825564227865407855889999886


Q ss_pred             HHCCCEECCCCCCCCEEEEECCEEEEEC-CCCCC-CEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHH
Q ss_conf             9828845545217831654574757306-98887-268863487221015451374853122216999437732179999
Q gi|254780947|r  151 ETNGFQRVNAVYKVGEYAVRGGILDVYE-PTKKY-PVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQN  228 (1187)
Q Consensus       151 v~~GY~Rv~~Ve~~GEFAvRGgIIDIFp-~~~~~-PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~  228 (1187)
T Consensus       174 V~lqY~RNd~~f~RG~FRvrGDVvEIfP~~~~~~~~~RiEfF~DEie~I~~~dpLtg~~~~~~~~~~ifPA~HyV~p~e~  253 (667)
T TIGR00631       174 VELQYERNDVDFQRGTFRVRGDVVEIFPAAYEDEFAVRIEFFGDEIERISLVDPLTGEVLRELDSFTIFPASHYVTPEER  253 (667)
T ss_pred             HHHCEEECCEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEHHHHCCCCCCHHHHCCCEEEECCCEECCCCHH
T ss_conf             34030571234057712576318986347767772489985255432021205110511100561586054000258047


Q ss_pred             HHHHHHHHHHHCCCCHH-----------------HCHHHHHHHCCCCCCCHHHHHHHHH-----CCCCCCCCCC---CCC
Q ss_conf             99999999974173700-----------------1577789977898788777677761-----4876767334---676
Q gi|254780947|r  229 ISRFRENYLANFGTTTQ-----------------EDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFPYL---SEF  283 (1187)
Q Consensus       229 i~~fr~~~r~~f~~~~~-----------------~~~i~e~Is~g~~~~GiE~yLPlFy-----e~~~tLfDYL---p~~  283 (1187)
T Consensus       254 ~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIENYSRhl~GR~~GEpP~tLlDYF~gfP~D  333 (667)
T TIGR00631       254 LERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIENYSRHLSGRKPGEPPYTLLDYFIGFPED  333 (667)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf             99999999999999999998779517888898868877888750673377000000216777631596477650468865


Q ss_pred             CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCC---CCCCCC
Q ss_conf             13346535899998899999998999998652220265567850211699899999751146089626753---222246
Q gi|254780947|r  284 CIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFN---QQETAH  360 (1187)
Q Consensus       284 ~iii~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~---~~~~~~  360 (1187)
T Consensus       334 fLlviDESHVT~PQ----~~GMY~GD~SRK~~LVeYGFRLPSAlDNRPLkfeEF~~~~---~Q~vyVSATPG~~E~e~S~  406 (667)
T TIGR00631       334 FLLVIDESHVTLPQ----IGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEERI---NQVVYVSATPGDYELEQSG  406 (667)
T ss_pred             EEEEEEECCCCHHH----HHHHHHCCHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHC---CCEEEEECCCCHHHHHHHC
T ss_conf             08988402575022----1344130467654332027753001358789879999855---9889996388589997326


Q ss_pred             CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             73377641466566820010011222200018589999999999867982999958945899999867764887332345
Q gi|254780947|r  361 NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKIN  440 (1187)
Q Consensus       361 ~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~  440 (1187)
T Consensus       407 ~~vvEQiiRPTGLlDP~i-------~VRP~~gQvdDL~~EI~~R~~~~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHS  479 (667)
T TIGR00631       407 GNVVEQIIRPTGLLDPEI-------EVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHS  479 (667)
T ss_pred             CCEEEEEECCCCCCCCEE-------EEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             915899873778648836-------8835851588889999999972894899820167788999997058837987145


Q ss_pred             CHHH------HHCCCCCCEEEEECC--CCCCCCCCC--EEEEECCCCCCCCCCCC----CC--CCCCCCCCCC-------
Q ss_conf             2245------520466847999810--446874665--68871200137311122----12--2222221101-------
Q gi|254780947|r  441 TLTE------INSLLKEEIAAVILP--INQGFETKH--MILVTETDLLGKKIARR----VV--RKKNVHAQSF-------  497 (1187)
Q Consensus       441 ~~~~------~~~~~~~~i~i~~~~--L~~GF~~~k--l~vITE~EIFG~k~~~r----~~--rkk~~~~~~i-------  497 (1187)
T Consensus       480 eIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEGFLRSerSLIQTIGRAARN~~G~VilYAD~iT  559 (667)
T TIGR00631       480 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKIT  559 (667)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             57899999999984478840886000200246511488997632788899866302788988875257965999728700


Q ss_pred             -----------------CCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECC-CCEEEEEHHHHHHHHHHC
Q ss_conf             -----------------22444032351120355423311231014566666359999869-987996667521111003
Q gi|254780947|r  498 -----------------FDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYAD-NAKLFVPVENIDLISRYS  559 (1187)
Q Consensus       498 -----------------~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~-~DkLYVPv~~l~lIskYg  559 (1187)
T Consensus       560 ~sM~~AI~ET~RRR~~Q~~YNe----------------~HgItP~ti~K~i~~~~~~~~~~~~~~~-----~~~~~~~~~  618 (667)
T TIGR00631       560 DSMQKAIEETERRRKIQIAYNE----------------EHGITPQTIRKKIKDILDIELKEKEDAA-----KKKKKGKVA  618 (667)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----------------HCCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHCCCCHH
T ss_conf             7899999987888999999997----------------5389788540568887777764445555-----532023112


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6788853234340348999999999999999999
Q gi|254780947|r  560 TEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKL  593 (1187)
Q Consensus       560 ~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eL  593 (1187)
T Consensus       619 ~~~-~~~~~~~~~~e~~~~I~~Le~~M~~aA~~l  651 (667)
T TIGR00631       619 EEP-AEDASDLSEKELKKLIKQLEKEMKQAARNL  651 (667)
T ss_pred             HHH-HCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             221-031320898799999999999999999752