HHsearch alignment for GI: 254780947 and conserved domain: TIGR00643

>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.00  E-value=0.3  Score=28.40  Aligned_cols=244  Identities=16%  Similarity=0.238  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCCCCC------CCCCCHHHHHCCCCCCEEEEECC---CC
Q ss_conf             999999999986798299995894----589999986776488733------23452245520466847999810---44
Q gi|254780947|r  395 DKFLSHVAQQAQKGIKTIISASSQ----GALQHLIHLIESHGFKKI------KKINTLTEINSLLKEEIAAVILP---IN  461 (1187)
Q Consensus       395 ~~L~~~I~~~~k~g~rViI~a~s~----~~~eRL~elL~e~gI~~~------~~~~~~~~~~~~~~~~i~i~~~~---L~  461 (1187)
T Consensus       344 VA~la-~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiq  422 (721)
T TIGR00643       344 VAALA-MLAAIESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQ  422 (721)
T ss_pred             HHHHH-HHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf             99999-99998469809991776899999999999962354857888615667878999999986395205733135545


Q ss_pred             CCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             68746--6568871200137311122122222221101224440323511203554233112310145666663599998
Q gi|254780947|r  462 QGFET--KHMILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHY  539 (1187)
Q Consensus       462 ~GF~~--~kl~vITE~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeY  539 (1187)
T Consensus       423 e~vef~~L~lVIiDEQHRFGV~QR~~L~-~KG~~~~~~------------------------------------------  459 (721)
T TIGR00643       423 EKVEFKRLGLVIIDEQHRFGVEQRKKLR-EKGQEGSMI------------------------------------------  459 (721)
T ss_pred             HHHHHHCCCEEEEECCCCCHHHHHHHHH-HHHHCCCCC------------------------------------------
T ss_conf             2144314774899323356078999999-862206886------------------------------------------


Q ss_pred             CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------HH
Q ss_conf             699879966675211110036788853234340348999999999999999999999998874015677878------46
Q gi|254780947|r  540 ADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVS------QD  613 (1187)
Q Consensus       540 a~~DkLYVPv~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d------~~  613 (1187)
T Consensus       460 -------------------------------------------------------------------G~~PH~L~MtATP  472 (721)
T TIGR00643       460 -------------------------------------------------------------------GFAPHVLVMTATP  472 (721)
T ss_pred             -------------------------------------------------------------------CCCCCEEEEECCC
T ss_conf             -------------------------------------------------------------------7777764663788


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHCCC----CCCCCEE------EECCCCCCHHHHHHHHHHHHHCCCCEEEEEECH
Q ss_conf             789899848888874489999999876059----8854144------316654324899999998751127549998243
Q gi|254780947|r  614 LYSQFIKRFPHVETEDQEKAIDAVIQDLSS----GRLMDRL------ICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPT  683 (1187)
Q Consensus       614 ~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes----~~PMDRL------iCGDVGfGKTEVA~RAafkav~~gkQvavlvPT  683 (1187)
T Consensus       473 IPRTLA---------------Lt~yGDld~S~I~elP~GR~pi~T~~~~~~~~~aW~~~v~~~~~~E~~~GrQaYvv~Pl  537 (721)
T TIGR00643       473 IPRTLA---------------LTVYGDLDVSIIDELPPGRKPITTYLIKHKEKGAWIDIVYEFIEEEIAKGRQAYVVYPL  537 (721)
T ss_pred             CHHHHH---------------HHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             147899---------------77650000334316854593389988842788775689999999998328908999644


Q ss_pred             ----HHH-----HHHHHHHHHHHH-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf             ----665-----558999999860-6789833541066630256777753122576089852065427852023656997
Q gi|254780947|r  684 ----TLL-----VRQHFRLFSERF-QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII  753 (1187)
Q Consensus       684 ----TiL-----a~QH~~tf~~Rf-~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii  753 (1187)
T Consensus       538 I~ESE~lp~lk~A~~~~~~l~~~f~~~~--~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsTT-VIEVGVDVPnAtvMVI  614 (721)
T TIGR00643       538 IEESEKLPDLKAAEALYERLKKAFLPKY--NVGLLHGRMKSDEKEAVMEEFREGEVDILVSTT-VIEVGVDVPNATVMVI  614 (721)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEE-EEEEEEECCCCCEEEE
T ss_conf             0320047168999999999888612210--011330689847899999985215836999976-8999861797727888


Q ss_pred             ECHHHHHHHHHHHH
Q ss_conf             22233008889988
Q gi|254780947|r  754 DEEQHFGVKHKEAL  767 (1187)
Q Consensus       754 DEEqrFGV~~Ke~l  767 (1187)
T Consensus       615 e~AeRFGLSQLHQL  628 (721)
T TIGR00643       615 EDAERFGLSQLHQL  628 (721)
T ss_pred             ECCCHHHHHHHHHH
T ss_conf             66551036888763