HHsearch alignment for GI: 254780947 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.00 E-value=0.3 Score=28.40 Aligned_cols=244 Identities=16% Similarity=0.238 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCCCCC------CCCCCHHHHHCCCCCCEEEEECC---CC
Q ss_conf 999999999986798299995894----589999986776488733------23452245520466847999810---44
Q gi|254780947|r 395 DKFLSHVAQQAQKGIKTIISASSQ----GALQHLIHLIESHGFKKI------KKINTLTEINSLLKEEIAAVILP---IN 461 (1187)
Q Consensus 395 ~~L~~~I~~~~k~g~rViI~a~s~----~~~eRL~elL~e~gI~~~------~~~~~~~~~~~~~~~~i~i~~~~---L~ 461 (1187)
T Consensus 344 VA~la-~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiq 422 (721)
T TIGR00643 344 VAALA-MLAAIESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQ 422 (721)
T ss_pred HHHHH-HHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf 99999-99998469809991776899999999999962354857888615667878999999986395205733135545
Q ss_pred CCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 68746--6568871200137311122122222221101224440323511203554233112310145666663599998
Q gi|254780947|r 462 QGFET--KHMILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHY 539 (1187)
Q Consensus 462 ~GF~~--~kl~vITE~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeY 539 (1187)
T Consensus 423 e~vef~~L~lVIiDEQHRFGV~QR~~L~-~KG~~~~~~------------------------------------------ 459 (721)
T TIGR00643 423 EKVEFKRLGLVIIDEQHRFGVEQRKKLR-EKGQEGSMI------------------------------------------ 459 (721)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHH-HHHHCCCCC------------------------------------------
T ss_conf 2144314774899323356078999999-862206886------------------------------------------
Q ss_pred CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------HH
Q ss_conf 699879966675211110036788853234340348999999999999999999999998874015677878------46
Q gi|254780947|r 540 ADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVS------QD 613 (1187)
Q Consensus 540 a~~DkLYVPv~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d------~~ 613 (1187)
T Consensus 460 -------------------------------------------------------------------G~~PH~L~MtATP 472 (721)
T TIGR00643 460 -------------------------------------------------------------------GFAPHVLVMTATP 472 (721)
T ss_pred -------------------------------------------------------------------CCCCCEEEEECCC
T ss_conf -------------------------------------------------------------------7777764663788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCC----CCCCCEE------EECCCCCCHHHHHHHHHHHHHCCCCEEEEEECH
Q ss_conf 789899848888874489999999876059----8854144------316654324899999998751127549998243
Q gi|254780947|r 614 LYSQFIKRFPHVETEDQEKAIDAVIQDLSS----GRLMDRL------ICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPT 683 (1187)
Q Consensus 614 ~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes----~~PMDRL------iCGDVGfGKTEVA~RAafkav~~gkQvavlvPT 683 (1187)
T Consensus 473 IPRTLA---------------Lt~yGDld~S~I~elP~GR~pi~T~~~~~~~~~aW~~~v~~~~~~E~~~GrQaYvv~Pl 537 (721)
T TIGR00643 473 IPRTLA---------------LTVYGDLDVSIIDELPPGRKPITTYLIKHKEKGAWIDIVYEFIEEEIAKGRQAYVVYPL 537 (721)
T ss_pred CHHHHH---------------HHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 147899---------------77650000334316854593389988842788775689999999998328908999644
Q ss_pred ----HHH-----HHHHHHHHHHHH-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf ----665-----558999999860-6789833541066630256777753122576089852065427852023656997
Q gi|254780947|r 684 ----TLL-----VRQHFRLFSERF-QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII 753 (1187)
Q Consensus 684 ----TiL-----a~QH~~tf~~Rf-~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii 753 (1187)
T Consensus 538 I~ESE~lp~lk~A~~~~~~l~~~f~~~~--~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsTT-VIEVGVDVPnAtvMVI 614 (721)
T TIGR00643 538 IEESEKLPDLKAAEALYERLKKAFLPKY--NVGLLHGRMKSDEKEAVMEEFREGEVDILVSTT-VIEVGVDVPNATVMVI 614 (721)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEE-EEEEEEECCCCCEEEE
T ss_conf 0320047168999999999888612210--011330689847899999985215836999976-8999861797727888
Q ss_pred ECHHHHHHHHHHHH
Q ss_conf 22233008889988
Q gi|254780947|r 754 DEEQHFGVKHKEAL 767 (1187)
Q Consensus 754 DEEqrFGV~~Ke~l 767 (1187)
T Consensus 615 e~AeRFGLSQLHQL 628 (721)
T TIGR00643 615 EDAERFGLSQLHQL 628 (721)
T ss_pred ECCCHHHHHHHHHH
T ss_conf 66551036888763