HHsearch alignment for GI: 254780947 and conserved domain: TIGR02071
>TIGR02071 PBP_1b penicillin-binding protein 1B; InterPro: IPR011813 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in Escherichia coli and other Proteobacteria, designated penicillin-binding protein 1B.; GO: 0008233 peptidase activity, 0008955 peptidoglycan glycosyltransferase activity, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic, 0009274 peptidoglycan-based cell wall.
Probab=97.57 E-value=0.00019 Score=53.09 Aligned_cols=95 Identities=19% Similarity=0.427 Sum_probs=74.9
Q ss_pred HHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEECCCCCCC--------EEEE
Q ss_conf 85236998668851548994097419999999999828845545217831654574757306988872--------6886
Q gi|254780947|r 117 AVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYP--------VRLD 188 (1187)
Q Consensus 117 ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~P--------iRIE 188 (1187)
T Consensus 31 G~~W~lP--a~VYaR~~~L~pg~~ls~~e~~~~L~~~~YR~~~~~~~PGey~~~~~~i~~~rR~F~F~D~~Ep~~r~rl~ 108 (742)
T TIGR02071 31 GKVWQLP--AAVYARILNLEPGMSLSKKELLRELDALQYRQVSSVTLPGEYSVQNSSIELIRRPFDFPDGAEPQRRVRLT 108 (742)
T ss_pred CCEEECC--HHHCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 8023047--11100222106630311899999985315760137888821688768789954677888888885689998
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCEEEEEC
Q ss_conf 348722101545137485312221699943
Q gi|254780947|r 189 FFGNTIDSLRLFDSSTQRTIREISIFEINT 218 (1187)
Q Consensus 189 FFGDeIESIR~FDp~TQRSi~~i~~i~I~P 218 (1187)
T Consensus 109 F~~~~l~~i~~~~--~~~~---~~~~RL~P 133 (742)
T TIGR02071 109 FNGNKLSKIENLD--NKRE---LGFFRLEP 133 (742)
T ss_pred ECCCCCHHHHHCC--CCCE---EHHCCCCH
T ss_conf 6487110011200--1420---10004560