HHsearch alignment for GI: 254780947 and conserved domain: TIGR02621

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=92.54  E-value=0.095  Score=32.20  Aligned_cols=127  Identities=14%  Similarity=0.093  Sum_probs=70.6

Q ss_pred             CCCCCCHH--HHCCCCCEEECCCCCEEEECCCCCC-CCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             11012244--4032351120355423311231014-56666635999986998799666752111100367888532343
Q gi|254780947|r  494 AQSFFDSS--NIEEGAIIVHAEHGIGRFVRLYSIE-VSGTFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKL  570 (1187)
Q Consensus       494 ~~~i~dl~--eL~~GDyVVH~dHGIGrY~GLe~l~-v~G~~~DyL~IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~kL  570 (1187)
T Consensus       709 ~~~~~D~~GGDlrtDD~----------~~g~~~~~~~~~v~pd~~e~~~~~~~~~~~p~~~~y~~~~~~~~~-~~~~~~~  777 (975)
T TIGR02621       709 CRIWDDLGGGDLRTDDP----------QSGMREERALIDVKPDAEELEEEAGADTVKPLLRWYLVEAATEDT-DGSKDSA  777 (975)
T ss_pred             EEEEECCCCCCCCCCCC----------HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCC-CCCCCCC
T ss_conf             67851588974425664----------233899998716998737898851550105415666402023788-7543210


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCCHH-HHHHH-----HHHCCCCCCHHHH
Q ss_conf             40348999999999999999999----99999887401567787846-78989-----9848888874489
Q gi|254780947|r  571 GGSAWKTRKANLKKRLEDLAQKL----VDIAAKRAIHSVPPLMVSQD-LYSQF-----IKRFPHVETEDQE  631 (1187)
Q Consensus       571 Gg~~W~k~K~Kakk~v~diA~eL----l~lyA~R~~~~g~~f~~d~~-~~~eF-----e~~FpyeET~DQ~  631 (1187)
T Consensus       778 ~~~~L~~H~d~v~~~A~~~~~~lGLg~l~~~a~~~AAr~HD~GK~d~~~Q~~LGa~~DesGfllleePrqr  848 (975)
T TIGR02621       778 DEVALSDHLDNVVEVAKKLVEKLGLGELLVEAVVLAARLHDLGKADPRFQTALGARSDESGFLLLEEPRQR  848 (975)
T ss_pred             CHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCC
T ss_conf             00103320004899999999871886346899999764067666666888863032334541320376411