HHsearch alignment for GI: 254780947 and conserved domain: TIGR02621
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=92.54 E-value=0.095 Score=32.20 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=70.6
Q ss_pred CCCCCCHH--HHCCCCCEEECCCCCEEEECCCCCC-CCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 11012244--4032351120355423311231014-56666635999986998799666752111100367888532343
Q gi|254780947|r 494 AQSFFDSS--NIEEGAIIVHAEHGIGRFVRLYSIE-VSGTFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKL 570 (1187)
Q Consensus 494 ~~~i~dl~--eL~~GDyVVH~dHGIGrY~GLe~l~-v~G~~~DyL~IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~kL 570 (1187)
T Consensus 709 ~~~~~D~~GGDlrtDD~----------~~g~~~~~~~~~v~pd~~e~~~~~~~~~~~p~~~~y~~~~~~~~~-~~~~~~~ 777 (975)
T TIGR02621 709 CRIWDDLGGGDLRTDDP----------QSGMREERALIDVKPDAEELEEEAGADTVKPLLRWYLVEAATEDT-DGSKDSA 777 (975)
T ss_pred EEEEECCCCCCCCCCCC----------HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCC-CCCCCCC
T ss_conf 67851588974425664----------233899998716998737898851550105415666402023788-7543210
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCCHH-HHHHH-----HHHCCCCCCHHHH
Q ss_conf 40348999999999999999999----99999887401567787846-78989-----9848888874489
Q gi|254780947|r 571 GGSAWKTRKANLKKRLEDLAQKL----VDIAAKRAIHSVPPLMVSQD-LYSQF-----IKRFPHVETEDQE 631 (1187)
Q Consensus 571 Gg~~W~k~K~Kakk~v~diA~eL----l~lyA~R~~~~g~~f~~d~~-~~~eF-----e~~FpyeET~DQ~ 631 (1187)
T Consensus 778 ~~~~L~~H~d~v~~~A~~~~~~lGLg~l~~~a~~~AAr~HD~GK~d~~~Q~~LGa~~DesGfllleePrqr 848 (975)
T TIGR02621 778 DEVALSDHLDNVVEVAKKLVEKLGLGELLVEAVVLAARLHDLGKADPRFQTALGARSDESGFLLLEEPRQR 848 (975)
T ss_pred CHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 00103320004899999999871886346899999764067666666888863032334541320376411