HHsearch alignment for GI: 254780947 and conserved domain: cd00046
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.25 E-value=0.24 Score=29.16 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=53.6
Q ss_pred CEEEECCCCCCHHHHHHHH-H----HH-CCCCEEEEECCHHHHHHHHHHHHHHCCC-CEEEECCCCCCCCHHCCCCCHHH
Q ss_conf 6089803765227999999-9----86-2998999929989999999999985799-80998572246701004899899
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAE-I----AR-LGLSLVYICSDERILINLKKILTLVVPD-IRVIIFPAWDCLPYDRVSPSPYV 88 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~-l----~~-~~rpilvI~~d~~~A~~l~~dL~~f~~~-~~V~~FP~~E~LPYd~~sp~~di 88 (1187)
T Consensus 1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~-------~~~~~~~--- 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYL-------IGGTSIK--- 70 (144)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEE-------ECCCCHH---
T ss_conf 999998899717999999999999975689769997467999999999999974887179999-------6136367---
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCC
Q ss_conf 99999999998412446887699956678523699
Q gi|254780947|r 89 VTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSV 123 (1187)
Q Consensus 89 ~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklp 123 (1187)
T Consensus 71 --~~~----~~~----~~~~~ilv~T~~~l~~~~~ 95 (144)
T cd00046 71 --QQE----KLL----SGKTDIVVGTPGRLLDELE 95 (144)
T ss_pred --HHH----HHH----CCCCCEEECCHHHHHHHHH
T ss_conf --789----874----5898499828899999997