HHsearch alignment for GI: 254780947 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=96.51 E-value=0.025 Score=36.72 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHH------HHHCCC--CCCEEEEECCCCCC
Q ss_conf 8589999999999867982999958945899999867764887332345224------552046--68479998104468
Q gi|254780947|r 392 GRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLT------EINSLL--KEEIAAVILPINQG 463 (1187)
Q Consensus 392 g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~------~~~~~~--~~~i~i~~~~L~~G 463 (1187)
T Consensus 12 ~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEECCEEC
T ss_conf 99999999999999789909999788999999999995589989999899999999999999775401048875112003
Q ss_pred CCCC--CEEEEEC
Q ss_conf 7466--5688712
Q gi|254780947|r 464 FETK--HMILVTE 474 (1187)
Q Consensus 464 F~~~--kl~vITE 474 (1187)
T Consensus 92 ldl~~~~~vI~~~ 104 (131)
T cd00079 92 IDLPNVSVVINYD 104 (131)
T ss_pred CCCCCCCEEEEEC
T ss_conf 6610287999978