HHsearch alignment for GI: 254780947 and conserved domain: cd00079

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=96.51  E-value=0.025  Score=36.72  Aligned_cols=83  Identities=16%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHH------HHHCCC--CCCEEEEECCCCCC
Q ss_conf             8589999999999867982999958945899999867764887332345224------552046--68479998104468
Q gi|254780947|r  392 GRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLT------EINSLL--KEEIAAVILPINQG  463 (1187)
Q Consensus       392 g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~------~~~~~~--~~~i~i~~~~L~~G  463 (1187)
T Consensus        12 ~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~~~~~G   91 (131)
T cd00079          12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG   91 (131)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEECCEEC
T ss_conf             99999999999999789909999788999999999995589989999899999999999999775401048875112003


Q ss_pred             CCCC--CEEEEEC
Q ss_conf             7466--5688712
Q gi|254780947|r  464 FETK--HMILVTE  474 (1187)
Q Consensus       464 F~~~--kl~vITE  474 (1187)
T Consensus        92 ldl~~~~~vI~~~  104 (131)
T cd00079          92 IDLPNVSVVINYD  104 (131)
T ss_pred             CCCCCCCEEEEEC
T ss_conf             6610287999978