HHsearch alignment for GI: 254780947 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.14 E-value=3.8e-08 Score=81.53 Aligned_cols=180 Identities=22% Similarity=0.194 Sum_probs=137.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEC
Q ss_conf 7878467898998488888744899999998760598854144316654324899999998751-----12754999824
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV-----MNGLQVAVIAP 682 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav-----~~gkQvavlvP 682 (1187)
T Consensus 4 l~L~~~ll~~l~~~g~~~pt~IQ~~~ip~il~g------~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~P 77 (203)
T cd00268 4 LGLSPELLRGIYALGFEKPTPIQARAIPPLLSG------RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAP 77 (203)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 965999999999879999999999999999779------98899757997222888869999986166768966999968
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-----HHHHCCCCCCCCCCEEEEECHH
Q ss_conf 36655589999998606789833541066630256777753122576089852-----0654278520236569972223
Q gi|254780947|r 683 TTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT-----HALLNPKITFANLGLIIIDEEQ 757 (1187)
Q Consensus 683 TTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-----H~ll~~~v~f~~LgLliiDEEq 757 (1187)
T Consensus 78 TrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD 153 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---LKR-GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH---HHC-CCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHH
T ss_conf 79999999999998505798389998389887999999---853-87599968189999998488651322489998588
Q ss_pred H-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 3-----008889988631678848999535340889999712225
Q gi|254780947|r 758 H-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRE 797 (1187)
Q Consensus 758 r-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd 797 (1187)
T Consensus 154 ~ll~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l~~~~l~~ 198 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRN 198 (203)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCC
T ss_conf 887477699999999858967779999804998899999997799