HHsearch alignment for GI: 254780947 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=93.13 E-value=0.72 Score=25.45 Aligned_cols=90 Identities=7% Similarity=0.121 Sum_probs=50.9
Q ss_pred CCCEEEECCCCCCHHHHHHH--HHHH---C---CCC-EEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCC
Q ss_conf 88608980376522799999--9986---2---998-9999299899999999999857998099857224670100489
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILA--EIAR---L---GLS-LVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla--~l~~---~---~rp-ilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp 84 (1187)
T Consensus 35 ~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~-----~~~gg~~- 108 (203)
T cd00268 35 SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV-----VIYGGTS- 108 (203)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEE-----EEECCCC-
T ss_conf 7998899757997222888869999986166768966999968799999999999985057983899-----9838988-
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCC
Q ss_conf 9899999999999984124468876999566785236
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCR 121 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqk 121 (1187)
T Consensus 109 ---~-~~~~~~---l-----~~~~~IlI~TPgrl~~~ 133 (203)
T cd00268 109 ---I-DKQIRK---L-----KRGPHIVVATPGRLLDL 133 (203)
T ss_pred ---H-HHHHHH---H-----HCCCEEEEECCHHHHHH
T ss_conf ---7-999999---8-----53875999681899999