HHsearch alignment for GI: 254780947 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.50 E-value=0.58 Score=26.16 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=16.0
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 608980376522799999998
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIA 36 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~ 36 (1187)
T Consensus 20 ~itEi~G~~GsGKTql~lqla 40 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLA 40 (235)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999984999999999