HHsearch alignment for GI: 254780947 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=99.78 E-value=1.7e-17 Score=153.58 Aligned_cols=152 Identities=30% Similarity=0.360 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC---CCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7448999999987605988541443166543248999999987511---2754999824366555899999986067898
Q gi|254780947|r 627 TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM---NGLQVAVIAPTTLLVRQHFRLFSERFQGFSV 703 (1187)
Q Consensus 627 T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~---~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv 703 (1187)
T Consensus 1 ~~~Q~~~i~~~~~------g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~ 74 (167)
T pfam00270 1 TPIQAEAIPAILE------GKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGL 74 (167)
T ss_pred CHHHHHHHHHHHC------CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9459999999976------9978998899975899999999999874778987999906088888999886432102676
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHH-----HCCCCCCCCCCEEEEECHHH-----HHHHHHHHHHHCCCC
Q ss_conf 33541066630256777753122576089852065-----42785202365699722233-----008889988631678
Q gi|254780947|r 704 RIASISRFVQTKEAALHKKSITEGQVDIVIGTHAL-----LNPKITFANLGLIIIDEEQH-----FGVKHKEALKETHTG 773 (1187)
Q Consensus 704 ~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~l-----l~~~v~f~~LgLliiDEEqr-----FGV~~Ke~lk~~~~~ 773 (1187)
T Consensus 75 ~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~~~g~~~~~il~~l~~~ 150 (167)
T pfam00270 75 KVALLYGGDSPKEQLRKLK----KGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQGFGDDLEEILRRLPPK 150 (167)
T ss_pred CEEEECCCCCHHHHHHHHC----CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 4046417861788987640----577079947899999998033121100389988088673358299999999857999
Q ss_pred CCEEEEECCCCCHHHH
Q ss_conf 8489995353408899
Q gi|254780947|r 774 VHVLTLSATPIPRTLQ 789 (1187)
Q Consensus 774 vdvLtlsATPIPRTL~ 789 (1187)
T Consensus 151 ~q~v~~SAT~-~~~~~ 165 (167)
T pfam00270 151 RQILLLSATL-PRNVE 165 (167)
T ss_pred CCEEEEECCC-CHHHH
T ss_conf 9789997269-97785