HHsearch alignment for GI: 254780947 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.34 E-value=0.045 Score=34.71 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCEEEECCCCCCHHHHHHH--HH---HHC--CCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 8608980376522799999--99---862--998999929989999999999985799
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILA--EI---ARL--GLSLVYICSDERILINLKKILTLVVPD 65 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla--~l---~~~--~rpilvI~~d~~~A~~l~~dL~~f~~~ 65 (1187)
T Consensus 14 g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~ 71 (167)
T pfam00270 14 GKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKY 71 (167)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 9978998899975899999999999874778987999906088888999886432102