HHsearch alignment for GI: 254780947 and conserved domain: pfam04851
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=99.17 E-value=2.3e-10 Score=98.68 Aligned_cols=100 Identities=28% Similarity=0.286 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88874489999999876059885414431665432489999999875112754999824366555899999986067898
Q gi|254780947|r 624 HVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSV 703 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv 703 (1187)
T Consensus 2 ~~LR~yQ~~a~~~~~~~---~---~~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlvp~~~L~~Q~~~~~--------- 66 (103)
T pfam04851 2 LELRPYQIEAIRNLLEK---K---RGLIVMATGSGKTLTAAKLIARLLKGKKKVLFLVPRKDLLEQALEEF--------- 66 (103)
T ss_pred CCCCHHHHHHHHHHHHC---C---CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH---------
T ss_conf 98729999999999963---9---86999589998799999999999846992999908299999999965---------
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHH-HHHHHHCCCCCCEEEEECC
Q ss_conf 335410666302567777531225760898520654278520236569972223300888-9988631678848999535
Q gi|254780947|r 704 RIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKH-KEALKETHTGVHVLTLSAT 782 (1187)
Q Consensus 704 ~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~-Ke~lk~~~~~vdvLtlsAT 782 (1187)
T Consensus 67 ----------------------------------------------lii~DE~H~~~a~~~~~~l~~~~~~~~~lGlTAT 100 (103)
T pfam04851 67 ----------------------------------------------VIIIDEAHHSSAKTKYRKILEYFKPAFLLGLTAT 100 (103)
T ss_pred ----------------------------------------------HHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEC
T ss_conf ----------------------------------------------6460163523537899999995772608998008
Q ss_pred CC
Q ss_conf 34
Q gi|254780947|r 783 PI 784 (1187)
Q Consensus 783 PI 784 (1187)
T Consensus 101 P~ 102 (103)
T pfam04851 101 PE 102 (103)
T ss_pred CC
T ss_conf 88