HHsearch alignment for GI: 254780947 and conserved domain: pfam07517
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=96.62 E-value=0.01 Score=39.62 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 65432489999999875112754999824366555899999986067898335410666302567777531225760898
Q gi|254780947|r 654 DVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVI 733 (1187)
Q Consensus 654 DVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idivi 733 (1187)
T Consensus 98 ~TGEGKTL~atl~a~l~AL~Gk~VhvvTvNdYLA~RDae~m~~vy~~LGLsvg~i~~~~~~~err~aY------~~DItY 171 (381)
T pfam07517 98 KTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVITSDMSPEERREAY------NCDITY 171 (381)
T ss_pred ECCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH------HCCCEE
T ss_conf 76998119999999999737997489975888868899997999998486054227889848889875------166055
Q ss_pred ECHHHHC
Q ss_conf 5206542
Q gi|254780947|r 734 GTHALLN 740 (1187)
Q Consensus 734 GTH~ll~ 740 (1187)
T Consensus 172 gTn~e~g 178 (381)
T pfam07517 172 GTNSELG 178 (381)
T ss_pred CCHHHHH
T ss_conf 0322321